NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187864_10378317

Scaffold Ga0187864_10378317


Overview

Basic Information
Taxon OID3300018022 Open in IMG/M
Scaffold IDGa0187864_10378317 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)614
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080789Metagenome114Y
F082563Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0187864_103783171F080789N/ADEAELSHLKEKINDPLAMKLVDNVLALDHLSAQVERPDLDDDTAQQLSDCNPPLPCLLAVFAEGDSIGGCFDEDAAGMMEVEPEPNIIIPFNPMDTASVQRTFCMFGVACQTIAAASRVIDLMPGNDQWIISR
Ga0187864_103783172F082563AGGMKAYVNIGANNEFRLTEAVLVYRGGGDGAFASLHQVKQAENGIPYLTPGEALTTAFLRTLAQGLGAQV

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