Scaffold Ga0187874_10011356

Overview

Basic Information

• Taxon OID: 3300018019
• Scaffold ID: Ga0187874_10011356
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5116
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003013	Metagenome / Metatranscriptome	513	Y
F013483	Metagenome / Metatranscriptome	271	Y
F071175	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187874_100113563	F003013	GAGG	VKATIKRRGKSEAELLDHATNNLLRALKQDMLKKDGRVDREKLRKEGYSDRLLARLEQA
Ga0187874_100113564	F013483	N/A	MSDENILRYTDLAAVIQMAKARGWPTARIVREMSSGLPYLEAIKLARKAAPLLDIPVSEFMRLRKNE
Ga0187874_100113567	F071175	GGA	MVIAVKSAMDNSINKTSVSLLAMAALVIAAIAAKVRASVDAQAPEGYEDESGFHFGSPPLGQ