Metagenome / Metatranscriptome Family F071175

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071175
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	55 residues
Representative Sequence	MDNSVNKASVSLLAMATLVIAAIAAKLRATAEAQAPEGYEDASGFHFGSPTNEG
Number of Associated Samples	72
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	33.33 %
% of genes near scaffold ends (potentially truncated)	27.05 %
% of genes from short scaffolds (< 2000 bps)	74.59 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.279 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (15.574 % of family members)
Environment Ontology (ENVO)	Unclassified (38.525 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (36.885 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 32.93% β-sheet: 9.76% Coil/Unstructured: 57.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF07670	Gate	19.67
PF02574	S-methyl_trans	8.20
PF04023	FeoA	4.92
PF00682	HMGL-like	2.46
PF16216	GxGYxYP_N	2.46
PF00144	Beta-lactamase	1.64
PF13442	Cytochrome_CBB3	1.64
PF00561	Abhydrolase_1	0.82
PF06283	ThuA	0.82
PF07396	Porin_O_P	0.82
PF07963	N_methyl	0.82
PF03900	Porphobil_deamC	0.82
PF02518	HATPase_c	0.82
PF13683	rve_3	0.82
PF09723	Zn-ribbon_8	0.82
PF01229	Glyco_hydro_39	0.82
PF13180	PDZ_2	0.82
PF15919	HicB_lk_antitox	0.82
PF02965	Met_synt_B12	0.82
PF10055	DUF2292	0.82
PF01704	UDPGP	0.82
PF17132	Glyco_hydro_106	0.82
PF03091	CutA1	0.82
PF11008	DUF2846	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG0646	Methionine synthase I (cobalamin-dependent), methyltransferase domain	Amino acid transport and metabolism [E]	8.20
COG2040	Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)	Amino acid transport and metabolism [E]	8.20
COG1918	Fe2+ transport protein FeoA	Inorganic ion transport and metabolism [P]	4.92
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.64
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.64
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.64
COG0181	Porphobilinogen deaminase	Coenzyme transport and metabolism [H]	0.82
COG1324	Divalent cation tolerance protein CutA	Inorganic ion transport and metabolism [P]	0.82
COG1410	Methionine synthase I, cobalamin-binding domain	Amino acid transport and metabolism [E]	0.82
COG3664	Beta-xylosidase	Carbohydrate transport and metabolism [G]	0.82
COG3746	Phosphate-selective porin	Inorganic ion transport and metabolism [P]	0.82
COG4284	UDP-N-acetylglucosamine pyrophosphorylase	Carbohydrate transport and metabolism [G]	0.82
COG4813	Trehalose utilization protein	Carbohydrate transport and metabolism [G]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.28 %
All Organisms	root	All Organisms	46.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.28 %
cellular organisms	root	All Organisms → cellular organisms	46.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.28 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.28 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	18.03 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.28 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	18.03 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.28 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	11.48 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	3.28 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.28 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	11.48 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.28 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.28 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	9.84 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.28 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.82 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.28 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	8.20 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.28 %
unclassified Verrucomicrobia subdivision 3	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3	1.64 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.82 %
Roseimicrobium	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseimicrobium	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.28 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	8.20 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.28 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1.64 %
Bradyrhizobium sp. A19	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. A19	0.82 %
Roseimicrobium	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseimicrobium	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.28 %
Pedosphaera parvula Ellin514	strain	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	4.10 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.28 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1.64 %
Bradyrhizobium sp. A19	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. A19	0.82 %
Roseimicrobium	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseimicrobium	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001471\|JGI12712J15308_10102555	Not Available	726	Open in IMG/M
3300004091\|Ga0062387_100385229	Not Available	939	Open in IMG/M
3300004092\|Ga0062389_104173089	Not Available	543	Open in IMG/M
3300005591\|Ga0070761_10774369	Not Available	603	Open in IMG/M
3300005591\|Ga0070761_11055994	Not Available	516	Open in IMG/M
3300005712\|Ga0070764_10480532	Not Available	744	Open in IMG/M
3300006638\|Ga0075522_10351103	Not Available	705	Open in IMG/M
3300009502\|Ga0114951_10018145	All Organisms → cellular organisms → Bacteria	4903	Open in IMG/M
3300009518\|Ga0116128_1211890	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300009547\|Ga0116136_1184878	Not Available	521	Open in IMG/M
3300009615\|Ga0116103_1110948	Not Available	691	Open in IMG/M
3300009630\|Ga0116114_1072352	Not Available	944	Open in IMG/M
3300009760\|Ga0116131_1098479	Not Available	878	Open in IMG/M
3300010343\|Ga0074044_10442772	Not Available	850	Open in IMG/M
3300014155\|Ga0181524_10346329	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300014156\|Ga0181518_10101759	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1604	Open in IMG/M
3300014159\|Ga0181530_10463055	Not Available	636	Open in IMG/M
3300014161\|Ga0181529_10413300	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300014162\|Ga0181538_10250415	Not Available	977	Open in IMG/M
3300014199\|Ga0181535_10033022	Not Available	3808	Open in IMG/M
3300014489\|Ga0182018_10071404	Not Available	2074	Open in IMG/M
3300014489\|Ga0182018_10162211	Not Available	1271	Open in IMG/M
3300014489\|Ga0182018_10337124	Not Available	814	Open in IMG/M
3300014489\|Ga0182018_10713065	Not Available	522	Open in IMG/M
3300014492\|Ga0182013_10023631	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	5426	Open in IMG/M
3300014493\|Ga0182016_10123199	All Organisms → cellular organisms → Bacteria	1791	Open in IMG/M
3300014495\|Ga0182015_10256949	All Organisms → cellular organisms → Bacteria	1152	Open in IMG/M
3300014495\|Ga0182015_10733668	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300014495\|Ga0182015_10952124	Not Available	535	Open in IMG/M
3300014499\|Ga0182012_10346300	Not Available	992	Open in IMG/M
3300014501\|Ga0182024_10000204	All Organisms → cellular organisms → Bacteria	142527	Open in IMG/M
3300014501\|Ga0182024_10033337	All Organisms → cellular organisms → Bacteria	8741	Open in IMG/M
3300014501\|Ga0182024_10251598	All Organisms → cellular organisms → Bacteria	2369	Open in IMG/M
3300014501\|Ga0182024_10323965	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	2025	Open in IMG/M
3300014501\|Ga0182024_10368189	Not Available	1871	Open in IMG/M
3300014501\|Ga0182024_10435041	Not Available	1687	Open in IMG/M
3300014501\|Ga0182024_10752537	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300014501\|Ga0182024_10826130	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1126	Open in IMG/M
3300014501\|Ga0182024_11954207	Not Available	650	Open in IMG/M
3300014501\|Ga0182024_12555719	Not Available	549	Open in IMG/M
3300014839\|Ga0182027_11360594	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300016750\|Ga0181505_10072300	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	509	Open in IMG/M
3300016750\|Ga0181505_10544351	Not Available	564	Open in IMG/M
3300017929\|Ga0187849_1233168	Not Available	707	Open in IMG/M
3300017935\|Ga0187848_10256913	All Organisms → cellular organisms → Bacteria	736	Open in IMG/M
3300017988\|Ga0181520_10217124	All Organisms → cellular organisms → Bacteria	1489	Open in IMG/M
3300018002\|Ga0187868_1097774	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300018004\|Ga0187865_1118548	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300018019\|Ga0187874_10011356	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	5116	Open in IMG/M
3300018033\|Ga0187867_10687703	Not Available	557	Open in IMG/M
3300018035\|Ga0187875_10304662	Not Available	861	Open in IMG/M
3300018035\|Ga0187875_10344713	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	801	Open in IMG/M
3300018038\|Ga0187855_10200195	Not Available	1179	Open in IMG/M
3300018038\|Ga0187855_10261037	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1016	Open in IMG/M
3300018040\|Ga0187862_10580629	Not Available	666	Open in IMG/M
3300018042\|Ga0187871_10052884	All Organisms → cellular organisms → Bacteria	2436	Open in IMG/M
3300018044\|Ga0187890_10149802	Not Available	1337	Open in IMG/M
3300019082\|Ga0187852_1351181	Not Available	580	Open in IMG/M
3300021181\|Ga0210388_11337306	Not Available	603	Open in IMG/M
3300021433\|Ga0210391_10893991	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300022555\|Ga0212088_10075031	All Organisms → cellular organisms → Bacteria	3321	Open in IMG/M
3300025633\|Ga0208480_1146550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. A19	537	Open in IMG/M
3300025634\|Ga0208589_1009929	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	2928	Open in IMG/M
3300027609\|Ga0209221_1076349	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	875	Open in IMG/M
3300027609\|Ga0209221_1140808	Not Available	604	Open in IMG/M
3300027701\|Ga0209447_10203077	Not Available	542	Open in IMG/M
3300027879\|Ga0209169_10410562	Not Available	712	Open in IMG/M
3300028800\|Ga0265338_11233244	Not Available	501	Open in IMG/M
3300029943\|Ga0311340_10752170	Not Available	828	Open in IMG/M
3300029999\|Ga0311339_11834213	Not Available	525	Open in IMG/M
3300030007\|Ga0311338_10181439	All Organisms → cellular organisms → Bacteria	2454	Open in IMG/M
3300030007\|Ga0311338_10428684	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	1410	Open in IMG/M
3300030532\|Ga0210290_1152311	Not Available	670	Open in IMG/M
3300030548\|Ga0210252_10529245	Not Available	601	Open in IMG/M
3300030549\|Ga0210257_10572034	Not Available	542	Open in IMG/M
3300030575\|Ga0210288_1239730	Not Available	526	Open in IMG/M
3300030740\|Ga0265460_12710748	Not Available	531	Open in IMG/M
3300030741\|Ga0265459_11786012	Not Available	723	Open in IMG/M
3300030741\|Ga0265459_13006998	Not Available	588	Open in IMG/M
3300030743\|Ga0265461_12638966	Not Available	596	Open in IMG/M
3300031234\|Ga0302325_10156091	All Organisms → cellular organisms → Bacteria	4064	Open in IMG/M
3300031234\|Ga0302325_10702327	Not Available	1456	Open in IMG/M
3300031234\|Ga0302325_11035548	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	1116	Open in IMG/M
3300031234\|Ga0302325_11589151	Not Available	835	Open in IMG/M
3300031234\|Ga0302325_12767695	Not Available	576	Open in IMG/M
3300031236\|Ga0302324_100010231	All Organisms → cellular organisms → Bacteria	19463	Open in IMG/M
3300031236\|Ga0302324_100101970	All Organisms → cellular organisms → Bacteria	4862	Open in IMG/M
3300031236\|Ga0302324_100192470	All Organisms → cellular organisms → Bacteria	3268	Open in IMG/M
3300031236\|Ga0302324_100362173	Not Available	2185	Open in IMG/M
3300031236\|Ga0302324_102440984	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	640	Open in IMG/M
3300031524\|Ga0302320_10109692	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	4381	Open in IMG/M
3300031525\|Ga0302326_10161019	All Organisms → cellular organisms → Bacteria	3837	Open in IMG/M
3300031525\|Ga0302326_11143998	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	1077	Open in IMG/M
3300031525\|Ga0302326_11810418	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseimicrobium	799	Open in IMG/M
3300031525\|Ga0302326_13171178	Not Available	556	Open in IMG/M
3300031525\|Ga0302326_13469045	Not Available	525	Open in IMG/M
3300031708\|Ga0310686_101452550	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300031708\|Ga0310686_103806863	All Organisms → cellular organisms → Bacteria	5005	Open in IMG/M
3300031708\|Ga0310686_104569422	Not Available	839	Open in IMG/M
3300031708\|Ga0310686_104642831	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2897	Open in IMG/M
3300031708\|Ga0310686_105573463	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	709	Open in IMG/M
3300031708\|Ga0310686_117436923	Not Available	906	Open in IMG/M
3300031715\|Ga0307476_10335941	All Organisms → cellular organisms → Bacteria	1111	Open in IMG/M
3300031718\|Ga0307474_11459996	Not Available	538	Open in IMG/M
3300032515\|Ga0348332_10949794	Not Available	525	Open in IMG/M
3300032605\|Ga0316232_1043513	All Organisms → cellular organisms → Bacteria	2312	Open in IMG/M
3300032675\|Ga0316225_1107469	All Organisms → cellular organisms → Bacteria	936	Open in IMG/M
3300033402\|Ga0326728_10008880	All Organisms → cellular organisms → Bacteria	24565	Open in IMG/M
3300033402\|Ga0326728_10027145	Not Available	10045	Open in IMG/M
3300033402\|Ga0326728_10038563	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	7580	Open in IMG/M
3300033402\|Ga0326728_10326392	Not Available	1374	Open in IMG/M
3300033402\|Ga0326728_10374304	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300033402\|Ga0326728_10530634	Not Available	944	Open in IMG/M
3300033402\|Ga0326728_10752849	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300033402\|Ga0326728_11093926	Not Available	541	Open in IMG/M
3300033405\|Ga0326727_10008389	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	26275	Open in IMG/M
3300033405\|Ga0326727_10033032	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	9057	Open in IMG/M
3300033405\|Ga0326727_10319550	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1507	Open in IMG/M
3300034091\|Ga0326724_0010791	All Organisms → cellular organisms → Bacteria	9443	Open in IMG/M
3300034091\|Ga0326724_0150033	Not Available	1447	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.18%
Host-Associated	Host-Associated	0.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.85%
Aquatic	Environmental → Aquatic	30.33%
Plants	Host-Associated → Plants	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	40.98%
Freshwater	Environmental → Aquatic → Freshwater	30.33%
Peat	Environmental → Terrestrial → Peat	27.05%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.82%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	27.05%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	27.05%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	18.03%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	17.21%
Loam	Environmental → Terrestrial → Soil → Loam	5.74%
Lentic	Environmental → Aquatic → Freshwater → Lentic	1.64%
Lake	Environmental → Aquatic → Freshwater → Lake	1.64%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	27.05%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	22.95%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	17.21%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.10%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.46%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	1.64%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.82%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	15.57%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	13.11%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	10.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.20%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	8.20%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	7.38%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	5.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.10%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.28%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.46%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.46%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.46%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	1.64%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.64%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	0.82%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.82%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.82%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.82%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.82%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300009502	Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009547	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40	Environmental	Open in IMG/M
3300009615	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009760	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_100	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014161	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018004	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300022555	Alinen_combined assembly	Environmental	Open in IMG/M
3300025633	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025634	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030532	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO410-VDE108SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030548	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR016SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030549	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO137-ANR102SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030575	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO747-VDE050SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032605	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18025_13	Environmental	Open in IMG/M
3300032675	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18015	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12712J15308_101025552	3300001471	Forest Soil	MDNSVNKASVSLLAMATLIIAAVAAKIRATAESQVPEGYEDASGFHFGSKNNEG*
Ga0062387_1003852292	3300004091	Bog Forest Soil	MNTGMDNNINKASFSLLAIATLVIAAIAAKIRATAEAQAPEGYEDATGFHFGHPSFDK*
Ga0062389_1041730891	3300004092	Bog Forest Soil	MDNSVNKASVSLLAMATLVIAAIAAKIRATAQAQVPEGYEDATGFHFGSPNREG*
Ga0070761_107743692	3300005591	Soil	MNTGMDNNMNKASISLLAMATLVIAAIAAKIRATAEAQVPEGYEDATGFHFGSPKIDN*
Ga0070761_110559941	3300005591	Soil	VGGILTAMKIVMDNNINKASVSLLALAALVIAAIAAKVRATVESQAPVGYEDEEGFHFGFRNE*
Ga0070764_104805322	3300005712	Soil	MDNSVNKASVSLLAMATLIIAAVAAKIRATAEAQVPEGYEDANGFHFGSKNNEG*
Ga0075522_103511032	3300006638	Arctic Peat Soil	MDNSVNKASVSLLAMATLVIAAIAAKLRATAEAQAPEGYEDASGFHFGSPSHED*
Ga0114951_100181453	3300009502	Freshwater	MNPGMDNSINKASVPILAMATLVIAAIAAKIRAAAESQAPEGYEDATGFHFGTPDFED*
Ga0116128_12118901	3300009518	Peatland	INKTSVSLLAMAALVIAALAAKVRASVDAQAPEGYEDESDFHFGSPPLGQ*
Ga0116136_11848782	3300009547	Peatland	MDNSSVNKASVSFLALAALVIAAIAAKIRATAEAQVPEGYEDATGFHFGSPNNEG*
Ga0116103_11109482	3300009615	Peatland	MVIAVKSAMDNSINKTSVSLLAMAALVIAAIAAKVRASVDAQAPEGYEDESGFHFGSPPLGQ*
Ga0116114_10723522	3300009630	Peatland	MKTAMDNNINKASVSLLAMAALVIAAIAAKIHATVEAQAPLGYEDETGFHFGNPDLGK*
Ga0116131_10984792	3300009760	Peatland	VGYSVAEPYGMVIAVKSAMDNSINKTSVSLLAMAALVIAAIAAKVRASVDAQAPEGYEDESGFHFGS
Ga0074044_104427721	3300010343	Bog Forest Soil	INKASVSVLAMAALVIAAIAAKIHATVDAQAPVGYEDEAGFHFGNPDLGE*
Ga0181524_103463292	3300014155	Bog	VMDNSVNKASVSLLAMVTLVIAAIAAKIRATAEAQAPEGYEDATGFHFGSPKIED*
Ga0181518_101017593	3300014156	Bog	MDNSVNKASVSLLAMAALVMAAIAAKIRASVEAQVPEGYEDATGFHFGSTNFED*
Ga0181530_104630551	3300014159	Bog	MAAAVTFAMDNSINKASVSLLAMTALVIAAIAAKVRASIESQVPEGYEDEAG
Ga0181529_104133001	3300014161	Bog	MDSTVNKATIPFLAIAMLVIAAIAAKVRATVSAQVPEGYEDETGFHFGSPTFKN*
Ga0181538_102504152	3300014162	Bog	MEVAVKLVVDNSINKTSVSLLAMAALVIAAIAAKIRASVEAQAPEGYEDESGFHFGSPPFGQ*
Ga0181535_100095494	3300014199	Bog	MDNSVNKATLSLITVMTLVLAVIAAKVRALVDAQAPVGYEDESGFHLGTPDFKE*
Ga0181535_100330222	3300014199	Bog	MDNHLNKTSVSLLAMATLVFAARVAKIRAAAESQVPEGYEDATGFHFGNQGNED*
Ga0182018_100714041	3300014489	Palsa	INKASVSLLAMAALVIAAVAAKVRATVESQAPVGYEDETGFHFGTPSGK*
Ga0182018_101622112	3300014489	Palsa	MDNNINKASVSLLAMAALVIAAIAAKVRATVESQAPVGYEDEAGFHFGNPMGR*
Ga0182018_103371241	3300014489	Palsa	MAALKFVMDNNVNKASVSMLAMAALVIAAIAAKVRATVESQAPVGYEDETGFHFGGPSGE
Ga0182018_107130651	3300014489	Palsa	MDNNINKASVSLLALAALVIAAIAAKVRATVEAQAPVGYEDEEGFHFGFPTGK*
Ga0182013_100236314	3300014492	Bog	MDSTINKATVPFFALAMLVIAAIAAKVRATVSAQVPEGYEDETGFHFGSPTFKN*
Ga0182016_101231993	3300014493	Bog	MDNNINKASVSVLAVAALVIAAIAAKIRASIEAQAPLGYEDESGFHFGNSSIGR*
Ga0182015_102569491	3300014495	Palsa	MKLVMDNNINKASVSLLAMAALVIAAVAAKVRATVESQAPVGYEDETGFHFG
Ga0182015_107336681	3300014495	Palsa	MKLVMDNNINKASVSLLAMAALVIAAIAAKVRATVESQAPVGYEDETGFHFGNPSGK*
Ga0182015_109521241	3300014495	Palsa	MNAGMDNTVNKASISLLAMTTLVIAAIAAKIRATAETQAPEGYEDATGFHFGAPKSEG*
Ga0182012_103463002	3300014499	Bog	MDTTMIKAPTVTVMAMATMVLSAIAAKVRATVDAQVPEGYEDESGFHFGKPDSRD*
Ga0182024_10000204102	3300014501	Permafrost	MDNTINKTTFSFLTIATVVIAAIAAKVRATIDAQVPEGYEDEAGFHFGRQDFNR*
Ga0182024_100333372	3300014501	Permafrost	MDNSVNKASVSLLAMATLIIAAIAAKIRASAEAQIPEGYEDATGFHFGSKNHEG*
Ga0182024_102515983	3300014501	Permafrost	MKIVMDNNINKASISLLAMATLVIAAIAAKIRATAEAQVPEGYEDATGFHFGSPNIEG*
Ga0182024_103239652	3300014501	Permafrost	MDTTIYSKPATVSLMTIATLVIAAISAKVRATFDAQVPEGYEDESGFHFGTPDFRN*
Ga0182024_103681893	3300014501	Permafrost	MDNNINKASISLLAMATLVIAAIAAKIRASAEAQAPEGYEDATGFHFGHPNFKE*
Ga0182024_104350413	3300014501	Permafrost	LKAGGILTAMKIVMDNNINKASVSLLALAALVIAAIAAKVRATVESQAPVGYEDEDGFHFGFRNE*
Ga0182024_107525371	3300014501	Permafrost	GRTLGTFIAMKLVMDNNINKASVSLLAMAALVIAAIAAKVRATVESQAPVGYEDEAGFHFGNPFGK*
Ga0182024_108261302	3300014501	Permafrost	MTGFMNGIMNKTTFSLLAMASLVIATIASKVRAVVDAQLPEGYEDESGFHFATPTFKN*
Ga0182024_119542071	3300014501	Permafrost	MKIVMDNNVNKVSVSLLAMAALVCAAVAAKVRATVESQAPVGYEDEEGFHFGNGLGE*
Ga0182024_125557192	3300014501	Permafrost	MKLVMDNNINKASVSLLAMAALVIAAVAAKVRATVESQAPVGYEDETGFHFGNPTGK*
Ga0182027_113605942	3300014839	Fen	MDNSINKASVPILAMATFVIAAIAAKIRAAAESQAPEGYEDATGFHFGTPNFED*
Ga0181505_100723001	3300016750	Peatland	VNKASIPLLAIAALVMAAIAAKVRATVDSQVPEGYEDASGFHFGTPNFDE
Ga0181505_105443511	3300016750	Peatland	NKASVSVLAVAALVIAAIAAKIRASIEAQAPVGYEDETGFHFGNTSSGR
Ga0187849_12331682	3300017929	Peatland	VAEPYGMVIAVKSAMDNSINKTSVSLLAMAALVIAAIAAKVRASVDAQAPEGYEDESGFHFGSPPLGQ
Ga0187848_102569131	3300017935	Peatland	MKTAMDNNINKASVSLLAMAALVIAAIAAKIHATVEAQAPLGYEDETGFHFGNPDLGK
Ga0181520_101252212	3300017988	Bog	MDNSVNKATLSLITVMTLVLAVIAAKVRALVDAQAPVGYEDESGFHLGTPDFKE
Ga0181520_102171242	3300017988	Bog	MFAEYMSMDNDINKTSVSLLAMATLVIAAIAAKIRATAEAQAPEGYEDATGFHFGAPSFK
Ga0187868_10977742	3300018002	Peatland	MNAGMDNSLNKASIPLLAMATLLIAAIAAKIRAAAEAQAPEGYEDATGFHFGSPDLEG
Ga0187865_11185482	3300018004	Peatland	VGYSVAEPYGMVIAVKSAMDNSINKTSVSLLAMAALVIAAIAAKVRASVDAQAPEGYEDESGFHFGSPPLGQ
Ga0187874_100113567	3300018019	Peatland	MVIAVKSAMDNSINKTSVSLLAMAALVIAAIAAKVRASVDAQAPEGYEDESGFHFGSPPLGQ
Ga0187867_106877031	3300018033	Peatland	TDALPTAMDNSINKASVSVLAVAALVSAAIAAKIRASIEAQAPVGYEDETGFHFGNTSSG
Ga0187875_103046621	3300018035	Peatland	KESVSILAIAALVIAAVAAKVRATVEAQAPVGYEDEAGFHFGNSTLRR
Ga0187875_103447131	3300018035	Peatland	MDNSVNKESVSILAIAALVIAAVAAKVRATVEAQAPVGYEDEAGFHFGNRSI
Ga0187855_102001952	3300018038	Peatland	MVNTMNKASVPFYAIMLVICAAIAAKVRAMLDAQVPEGYEDENGFHYGSPTFKS
Ga0187855_102610372	3300018038	Peatland	MDNSVNKESVSILAIAALVIAAVAAKVRATVEAQAPVGYEDEAGFHFGNSTLRR
Ga0187862_105806291	3300018040	Peatland	MDNSVNKASVSLLAMAALVMAAIAAKIRASVEAQVPEGYEDATGFHFGSTNFED
Ga0187871_100528845	3300018042	Peatland	MNAVMDNTVNKASISLLAMAALVVAAIVAKVRSTVEAQAPEGYEDA
Ga0187890_101498022	3300018044	Peatland	MNKASVSFFALALLVIAAVAAKIRAAIDAQVPEGYEDETGFHFGSPNLKG
Ga0187852_13511811	3300019082	Peatland	MDNSVNKASVSLLAMVTLVIAAIAAKIRATAEAQAPEGYEDATGFHFGSPKIED
Ga0210388_113373061	3300021181	Soil	MDNSVNKASVSLLAMATLVIAAIAAKLRATAEAQAPEGYEDASGFHFGSPTNEG
Ga0210391_108939911	3300021433	Soil	MDNSVNKATFSLLAVATLVMAAIAAKVRATVNSQLPEGYEDESGFHFGPPEINN
Ga0212088_100750313	3300022555	Freshwater Lake Hypolimnion	MNPGMDNSINKASVPILAMATLVIAAIAAKIRAAAESQAPEGYEDATGFHFGTPDFED
Ga0208480_11465502	3300025633	Arctic Peat Soil	KASVSLLAMATLILAAVAAKVRATIDSQAPEGYEDERGFHFGGPAINE
Ga0208589_10099293	3300025634	Arctic Peat Soil	MLTLVSMDNNVNKATVSLLAMAGVVIAAIAARIHATVNSQAPVGYEDASGFHFGAPSFEE
Ga0209221_10763491	3300027609	Forest Soil	MNTYFNNNVNKESLSLLAAMALLIAAIATKLRPTVDEQVPEGYEDASGFHFG
Ga0209221_11408082	3300027609	Forest Soil	MKIVMDNNINKASVSLLAMATLVIAALAAKVRSTVDSQAPLGYEDESGFHFGNPNLKD
Ga0209447_102030771	3300027701	Bog Forest Soil	MDNSVNKASVSLLAMATLIIAAVAAKIRATAESQVPEGYEDASGFHFGSKNNEG
Ga0209169_104105622	3300027879	Soil	MDNSVNKASVSLLAMATLIIAAVAAKIRATAEAQVPEGYEDANGFHFGSKNNEG
Ga0265338_112332441	3300028800	Rhizosphere	MENSMNKAATVTLMTIATLIIAAVAAKIRATINAQVPEGYEDEAGFHFGSPNFKN
Ga0311340_107521701	3300029943	Palsa	MNAVMDNTVNKASISLLALTTLVFAAIAAKIRATAEAQAPEGYEDASGFHFGSPTNE
Ga0311339_118342131	3300029999	Palsa	MNAVMDNTVNKASISLLALTTLVFAAIAAKIRATAEAQAPEGYEDASG
Ga0311338_101814392	3300030007	Palsa	MRMDNTINKTSISLLAMATLVIAAIAAKIRATAEAQAPEGYEDATGFHFGSSNFEE
Ga0311338_104286841	3300030007	Palsa	MEVAMKIIMDNTTINKASFSILAMATLVLAALAAKLRASIEAQAPEGYEDESGFHLGPPNLKG
Ga0210290_11523111	3300030532	Soil	NKTSFSLLAIATLVIAAIAAKLRAAAEAQAPSGYEDETGFHFGAPSQRS
Ga0210252_105292451	3300030548	Soil	TFNKTSFSLLAIATLVIAAIAAKLRAAAEAQAPSGYEDETGFHFGAPSQRS
Ga0210257_105720342	3300030549	Soil	FSLLAIATLVIAAIAAKLRAAAEAQAPSGYEDETGFHFGAPSQRS
Ga0210288_12397301	3300030575	Soil	SFSLLAIATLVIAAIAAKLRAAAEAQAPSGYEDETGFHFGAPSQRS
Ga0265460_127107481	3300030740	Soil	MDNNINKASVSLLAMAALVIAAIAAKVRATVESQAPVGYEDESGFHFGNPMGR
Ga0265459_117860121	3300030741	Soil	DNTTFNKTSFSLLAIATLVIAAIAAKLRAAAEAQAPSGYEDETGFHFGAPSQRS
Ga0265459_130069982	3300030741	Soil	MKIVMDNNINKASVSLLAMAALVIAAVAAKVRATVESQAPVGYEDEKGFHFGNPAGE
Ga0265461_126389662	3300030743	Soil	FNKTSSSLLAIATLVIAAIAAKLRAAAEAQAPSGYEDETGFHFGAPSQRS
Ga0302325_101560913	3300031234	Palsa	MNAGMDNTVNKASISLLAMTTLVIAAIAAKIRATAETQAPEGYEDATGFHFGAPKSEG
Ga0302325_107023272	3300031234	Palsa	MDNNMNKASFSLLAIAALVIAAIAAKIRATAEGQAPVGYEDATGFHFGTRN
Ga0302325_110355482	3300031234	Palsa	MKSGMDNNINKASVPLMAMAALMIAAIAAKIRASIEAKVPQGYEDETGFHLGSRNLKG
Ga0302325_115891511	3300031234	Palsa	MNAVMDNTVNKASISLLALTTLVFAAIAAKIRATAEAQAPEGYEDASGFHF
Ga0302325_127676951	3300031234	Palsa	MKNVMDNNMNKASLPLLALATLALAAIYAKIRAAALAQAPEGYEDATGFHFGSPQF
Ga0302324_10001023110	3300031236	Palsa	MNAVMDNTVNKASISLLALTTLVFAAIAAKIRATAEAQAPEGYEDASGFHFGSPTNEG
Ga0302324_1001019703	3300031236	Palsa	MDNNMNKASVSLLAMATLVIAAIAAKIRATAEAQVPEGYEDATGFHFGHSNFEE
Ga0302324_1001924703	3300031236	Palsa	MKIIMDNTTINKASFSILAMATLVLAALAAKLRASIEAQAPEGYEDESGFHLGPPNLKG
Ga0302324_1003621732	3300031236	Palsa	MDNTMNKATVSLLTIATLVIAAIAAKVRATLNAQAPEGYEDESGFHFGSPDFKN
Ga0302324_1024409841	3300031236	Palsa	KSGMDNNINKASVPLMAMAALMIAAIAAKIRASIEAKVPQGYEDETGFHLGSRNLKG
Ga0302320_101096923	3300031524	Bog	MDSTINKATVPFFALAMLVIAAIAAKVRATVSAQVPEGYEDETGFHFGSPTFKN
Ga0302326_101610192	3300031525	Palsa	MDNTINKTSISLLAMATLVIAAIAAKIRATAEAQAPEGYEDATGFHFGSSNFEE
Ga0302326_111439982	3300031525	Palsa	MKIVMDNTTMNKASFSLLAMATLMIAALAAKIRASIESAAPEGYEDENGFHLGSRDLKG
Ga0302326_118104182	3300031525	Palsa	MNEGIVMSKASISLLAMAALVIVSMAKKIRDTVTAQAPEGYQDALGFHFGSKKR
Ga0302326_131711781	3300031525	Palsa	MKDGMDNTMNKASFSLLAMAAMVIAAIAAKIRATAEAQAPEGYEDATGFHFGSPN
Ga0302326_134690451	3300031525	Palsa	VPLGMGAANNCGMDNTTVNKASVSLLAMATLVIAAIAAKIRATAEAQAPEGYEDASGFHFGSQTIDR
Ga0310686_1014525502	3300031708	Soil	MKIVMDNNINKASVSLLAMAALVCAAIAAKVRATVDSQAPVGYEDEEGFHFGNPLGK
Ga0310686_1038068633	3300031708	Soil	MDNGMDNNMNKASVSLLAMATLVIAAIAAKIRATAIAQAPEGYEDAAGFHFGHPNFEE
Ga0310686_1045694221	3300031708	Soil	MNTGMDNNINKASFSILAMATLVIAAIAAKIRATAEAQAPEGYEDANGFHFGAPQCDE
Ga0310686_1046428313	3300031708	Soil	MNTYFNNNVNKESLTLLAALALLIAAIAAKLRPTVDEQVPEGYEDASGFHFGSPRLKD
Ga0310686_1055734631	3300031708	Soil	NNINKASVSLLAMAALVIAAVAAKVRATVESQAPVGYEDEKGFHFGNPAGE
Ga0310686_1174369231	3300031708	Soil	MDNSMNKASFSLLAMATLVIAAIAAKIRATATAQAPEGYEDATGFHFGHANFEE
Ga0307476_103359413	3300031715	Hardwood Forest Soil	MNATMNKTTFSLLAMASMVMAMIASKVRAVVDEQLPEGYEDESGFHPGTPTFKD
Ga0307474_114599962	3300031718	Hardwood Forest Soil	MRMDNNINKATFSILAVFTLVAAAIMHKIRTTVEAQAPEGYED
Ga0348332_109497941	3300032515	Plant Litter	KEIAMKVVMDNNMNKASLPLLALAAFVIAAIIAKIRAAALAQAPVGYEDAAGFHFGSPGSED
Ga0316232_10435132	3300032605	Freshwater	SMDNDINKTSVSLLAMATLVIAAIAAKIRATAEAQAPEGYEDATGFHFGAPSFKD
Ga0316225_11074691	3300032675	Freshwater	FAEYMSMDNDINKTSVSLLAMATLVIAAIAAKIRATAEAQAPEGYEDATGFHFGAPSFKD
Ga0326728_1000888016	3300033402	Peat Soil	MVSTMNKASVPFFALVMLVIAAIAAKIRATVKAQVPEGYEDETGFHFGTPDLKS
Ga0326728_1002714511	3300033402	Peat Soil	MVSTINKASVPFLAIVVVVLAAIAAKVRATINAQVPEGYEDETGFHFGTPDLKN
Ga0326728_100385633	3300033402	Peat Soil	MVSTINKASVPFLALVVVVLAAIAAKVRATINAQVPEGYEDETGFHFGSPDLKN
Ga0326728_103263922	3300033402	Peat Soil	MNKASVPFLALAMLLIAAIAAKIRATVNAQVPEGYEDETGFHFGTPDLKS
Ga0326728_103743042	3300033402	Peat Soil	MVSTMNKASVPFLALVMVVLAAIAAKVRATVNAQVPEGYEDETGFHFGTPDFKN
Ga0326728_105306341	3300033402	Peat Soil	GMDNSVNKASVPLLALAMVILAAIAAKVRATINAQVPEGYEDETGFHFGTPDLKN
Ga0326728_107528491	3300033402	Peat Soil	MNKASVPFLALVVVILAAIAAKVRAAINAQVPEGYEDETGFHFGTPDLKN
Ga0326728_110939261	3300033402	Peat Soil	MQHGMDNSVNKASVSLLAMTALVLAAIVAKLRSTAEAQAPEGYEDATGFHFGSPTIED
Ga0326727_100083897	3300033405	Peat Soil	MLMVICMVSTINKGSVPFLALVMMVLAAIAAKVRAAINAQVPVGYEDETGFHYGTPDFKN
Ga0326727_1003303211	3300033405	Peat Soil	MKTVMDNNINKASVSLLAMAALVIAAIAAKIHATVEAQAPLGYEDETGFHFGNPDLGK
Ga0326727_103195502	3300033405	Peat Soil	MDSTMNKASVPFLALAMLLIAAIAAKIRATVNAQVPEGYEDETGFHFGTPDLKS
Ga0326724_0010791_6709_6873	3300034091	Peat Soil	MDNSVNKASVSLLAMAALIMAAIAAKLRASIEAQAPEGYEDATGFHFGPVNFED
Ga0326724_0150033_367_531	3300034091	Peat Soil	MVSTINKGSVPFLALVMMVLAAIAAKVRAAINAQVPVGYEDETGFHYGTPDFKN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071175

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences