Scaffold Ga0184610_1035929

Overview

Basic Information

• Taxon OID: 3300017997
• Scaffold ID: Ga0184610_1035929
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1413
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005908	Metagenome / Metatranscriptome	386	Y
F049536	Metagenome / Metatranscriptome	146	Y
F057269	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184610_10359291	F057269	N/A	STEKIGGLSFIGGTPSFSAKDPNDAYGRLINQLVYNVTYDVRSTWVDQ
Ga0184610_10359293	F005908	GAG	MIKPVLQLAAVGVVGIVLWKVASALLLPLFFVVFKVALIAGLIMLAFWYFNKKGRGKEDTPPASS
Ga0184610_10359294	F049536	N/A	HGELKPENVLLADEGILVVDTGIAAALGKPASARNDMAAVQSLTREMLNGAKPTIADEPLELTRTLPLWLSEWLRSRWSDAGRALAGMRPPPPSTSQSSQLFA