Scaffold Ga0187891_1000175

Overview

Basic Information

• Taxon OID: 3300017996
• Scaffold ID: Ga0187891_1000175
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67781
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (66.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000335	Metagenome / Metatranscriptome	1276	Y
F000451	Metagenome / Metatranscriptome	1124	Y
F002261	Metagenome / Metatranscriptome	577	Y
F003186	Metagenome / Metatranscriptome	502	N
F015314	Metagenome / Metatranscriptome	255	N
F021908	Metagenome / Metatranscriptome	216	Y
F022873	Metagenome	212	Y
F100557	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187891_100017523	F000335	N/A	MPASLCTAFTELREYAQLQNQFHDGTIQRSQLAQTSRRTFRLSKRLSASVLSALYSFWMSQNAGLTPFAFYNPFDVASGQQIGSNYDPTGNNTQGRVTVVFRGNWAQATDIARTNVQALELVEVV
Ga0187891_100017525	F000451	N/A	MRRFQTVVKSARFVYSPYTATEMQGFAQVLADSIRARIQSGQNIYDQASAPLKPGLAGRRGYPDYKAARGLNPVRDWTWSGHTLRCLKVLTANENRAAIGFLDEALPGRRMTASQIAAFNNRREAQWGVSPRDRRAVLAAFQTRPFVMLKAA
Ga0187891_100017527	F021908	N/A	MDGCPACGTDWKAIDVSHGPGCPKNLLEEAMDTPNGTLVRRCFRILNAKSIGLTITLADITEEEFRVLELIEAERQEQISSGGKSARNSR
Ga0187891_100017531	F003186	N/A	VINPKTILGEWVTALQSCPDLVTAIGGDGNNIRAFMEGLATDNNLRLAILQMPPGSILVAWNGTTPRRLTGGALHFAHRFSIYLRAPEQNSTATYADLFWLLVSAIPTGAPSWASLLHFQIDPDCFPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
Ga0187891_100017532	F002261	GGA	MPNWPSIEAFVDGVIAQTFGEPVVYQPVQAGAAHGSAFTVTAVRHLRPRDESGAMASFEEISVNASDFANPPAKGDWVTAWGTQYVVTTVRQPDAYGMLNLALLQRS
Ga0187891_100017535	F015314	GGCGG	MMLRRESWARLTRGLVPPLYVLRPLQGFTPSDIGDEYPAPDAANKVQLTRTRQLYEQRRIGTQVEVERALSRLPKQEPAKPGKEKRHGSQSGKNAR
Ga0187891_100017545	F100557	N/A	VDRCRAEIAAAEALLRAGHPDVEGLCMALADWSAELRILERGRDE
Ga0187891_10001759	F022873	AGGA	MLFEGEELREIISRTSNEIELRNEHGRCCRFLSSAEALVLDLDLFVGIGNRRRIRFLRSRTQKFALNAGSHTTQRLKGEAEINIAHPLVREHRPVWSK