Scaffold Ga0187781_10015964

Overview

Basic Information

• Taxon OID: 3300017972
• Scaffold ID: Ga0187781_10015964
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5290
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.0627
  • Long. (^o): -73.195
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F004291	Metagenome / Metatranscriptome	445	Y
F036398	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187781_100159641	F036398	N/A	VTTYLGVRPGMHVWLGMDWDVDHSMGAMFMPIRRHVSFGITQQFRLHR
Ga0187781_100159642	F004291	GGAGG	MDFRKLALLTLLAATAVPAAQAQIKHIEMRVEGMT
Ga0187781_100159643	F000092	GAG	VKQHLGRQSGVQSVEVSLIDGKVDITPKEDGQIDPAQLLKATYDSGVTATEMDLIVRGKVVNDAAGNLTLQVSPNQSFVFASNDLSKSLEPLAGSPTVMTVRGQVYKKPPGKQKAAPPGPLRLLILEVQRKE