Scaffold Ga0181587_10300482

Overview

Basic Information

• Taxon OID: 3300017968
• Scaffold ID: Ga0181587_10300482
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1082
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079409	Metagenome / Metatranscriptome	115	Y
F092982	Metagenome / Metatranscriptome	106	N
F092983	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181587_103004821	F092983	N/A	MNLKEEIIKATTNQKDDELLLLEDLFDFCQSEDRVHPFGLPYETGPFAVIRNHKDFILNIFPPNQCILGAAEDALETKRERLLTHIFWAFKKGLIFEFNKELLKLSDEEWDKESDSLILKEEIDNLRTFSIHEISNAYDSLEQETKV
Ga0181587_103004822	F079409	AGGAGG	MTKYTLIIAGKDDKIYKEGFAVSNTKPRYRIGSKETADKFNKGGVSIIPLSRKKEL
Ga0181587_103004823	F092982	AGG	MKYVVAKLIAIFLGFKIAFIVLNDTGLIPNPIFIVSVTILATTLGYLSCKFFYNGLLSVFEDHRPSEEQDRDPIL