NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F079409

Metagenome / Metatranscriptome Family F079409

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F079409
Family Type Metagenome / Metatranscriptome
Number of Sequences 115
Average Sequence Length 58 residues
Representative Sequence MAKYTLTKAGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGVSIIPLSGNKKL
Number of Associated Samples 50
Number of Associated Scaffolds 115

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 66.09 %
% of genes near scaffold ends (potentially truncated) 53.04 %
% of genes from short scaffolds (< 2000 bps) 86.96 %
Associated GOLD sequencing projects 33
AlphaFold2 3D model prediction Yes
3D model pTM-score0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (74.783 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh
(100.000 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(100.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 23.81%    β-sheet: 0.00%    Coil/Unstructured: 76.19%
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Variant

510152025303540455055MAKYTLTKAGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGVSIIPLSGNKKLSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.15
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
25.2%74.8%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Salt Marsh
100.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0182057_124853323300016732Salt MarshMVKYTLTKAGKKDKIYKEGYTISNTKPRYRIGSKETADKFNKGGVQIIAISSRKK
Ga0182062_113581033300016751Salt MarshGIVPKVLKQEVIMAKYTLIKAGKDDKIFKEGFTISKTKPRYRIGSKETADKFNKGGVSIIPLSGNKKL
Ga0182082_113565123300016771Salt MarshMAKYTLTVADKDDKIYKEGFTITNTKPRYRIGSKETADKFNKGGVQIIAISSRKK
Ga0182063_101363013300016781Salt MarshTKAGKEDKIFKEGFTLSNTKPRYRIGTKETADKFNKGGVQIITISSRKKEC
Ga0182063_138491323300016781Salt MarshMAKYTLIKAGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGVSIIPLSGNKKL
Ga0182080_167289233300016787Salt MarshGIVPKVLKQEVIMTKYTLTIAGKDDKIYKEGFAVSNTKPRYRIGSKETADKFNKGGVSIIPLSRKKEL
Ga0181565_1009262623300017818Salt MarshMAKYTLTIAGKDDKIYKEGFTISNTKPRYRIGSKETADKFNKGGAQVIPIESKK
Ga0181565_1019151223300017818Salt MarshMAKYTLTKAGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGAQVIPVESKNKG
Ga0181565_1026832513300017818Salt MarshMAKYTLTKAGKDDKIFKEDFTISNTKPRYRIGSKETADKFNKGGCQIIPLSRK
Ga0181565_1027487923300017818Salt MarshVPKVLKQEVIMAKYTLIKAGKDDKIFKEGFTISKTKPRYRIGSKETADKFNKGGVSIIPLSGNKKL
Ga0181565_1028867613300017818Salt MarshMAKYTLTKAGKQDKIFKEGFIISNTKQRYRIGSKETADKFNKGGVQIITISSRKR
Ga0181565_1032400623300017818Salt MarshMTKDTLTIAGNNDKIYKEGFNVSNTKPRYRIGSKETADKFNKGGVSIIPLSRKKEL
Ga0181565_1037797613300017818Salt MarshMAKYTLIKAGKDDKIFKEGFIISNTKPRYRIGSKETADKFNKGGVSIIP
Ga0181565_1042868633300017818Salt MarshMAKYTLTKAGKKDKIFKEGYTISNTKPRYRIGSKETADKFNKGGVQIIAISSRKK
Ga0181565_1047618823300017818Salt MarshMVPKVLKQEVKMAKYTLTKAGKDDEIFKEGFTISNIKPRYRIGSKETADKFNKGGAQVIPVESKK
Ga0181565_1071924823300017818Salt MarshMAKYTWSIAGKDDKIFKEGFTLSNTKPRYRIGSKETADKFNKGGAQVIPIESIDKVKER
Ga0181565_1082004813300017818Salt MarshMAKYTWSIAGKDDKIFKEGFTISNTNPRYRIGSKETADKFNKGGAQVIPIESKK
Ga0181565_1085239323300017818Salt MarshMAKFTWSIAGKNDKIFKEGFTISNTKPRYRIGSKETADKFNKGGVSIIPLLRKIEP
Ga0181565_1087431423300017818Salt MarshMAKYTLTIAGKDDKIFKEGFTVSNTKPRYRIGSKETADKFNSGGVSVIPLSRKGKNHK
Ga0181584_1012933133300017949Salt MarshMTKYTLTIAGNNDKIYKEGFNVSNTKPRYRIGSKETADKFNKGGVSIIPLSRKKEL
Ga0181584_1031574633300017949Salt MarshMAKYTLIKAGKDDKIFKEGFIISNTKPRYRIGSKETADKFNKGGVSIIPLLGKIKP
Ga0181577_1011956933300017951Salt MarshMAKFTWSIAGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGVSIIPLSGNKKL
Ga0181577_1037912613300017951Salt MarshKEGFIISNTKPRYRIGSKETADKFNKGGVSIIPLLGKIKP
Ga0181583_1010889733300017952Salt MarshMAKYTWSIAGKDDKIYKEGFTISNTKPRYRIGSKETADKFNKGGAQVIPIEPKNKI
Ga0181583_1056332523300017952Salt MarshMAKYTLNKAGKDDKIFKKGFSLSNTKPRYRIGSKETADKFNKGGAQVIPIESKDKVKE
Ga0181583_1090578313300017952Salt MarshDKIYKEGFIISNTKPRYRIGSKETADKFNKGGVSIIPLLGKIKP
Ga0181583_1093152513300017952Salt MarshMAKYTLTKAGKDDEIFKEGFTISNIKPRYRIGSKETADKFNKGGAQVIPVESKNKG
Ga0181580_1002301563300017956Salt MarshMAKYTLTIAGKDDKIYKEGFTISNTKPRYRIGSKETADKFNKGGAQVIPIESKKV
Ga0181580_1041194013300017956Salt MarshMAKFTWSIAGKDDKIFKEGFIISNTKPRYRIGSKETADKFNKGGVSIIPLLGKIKP
Ga0181571_1010777413300017957Salt MarshAGKDDKIFKEGFIISNTKPRYRIGSKETADKFNKGGVSIIPLLGKIKP
Ga0181571_1015333713300017957Salt MarshAGKDDKIYKEGFTISNTKPRYRIGSKETADKFNKGGAQVIPIESKK
Ga0181571_1021585943300017957Salt MarshMTKYTLTIAGNDDKIYKEGFTVSNTKPRYRIGSKETADKFNKGGVSIIPLSRKKEL
Ga0181571_1066240413300017957Salt MarshMAKYTLTKAGKDDEIFKEGFTISNIKPRYRIGSKETADKFNKGGAQVIPVESKK
Ga0181582_1013951933300017958Salt MarshVPKVLKQEVIMAKYTLTKAGKEDKIFKEGYTISNTKPRYRIGSKETADKFNKGGVQIIAISSRKK
Ga0181581_1002971963300017962Salt MarshVRLGIVPKVLKQEVIMAKYTLTKAGKEDKIFKEGFTLSNTKPRYRIGTKETADKFNKGGVQIITISSRKKEC
Ga0181581_1024992033300017962Salt MarshMAKYTWSIAGKDDKIFKEGFTLSNTKPRYRIGSKETADKFNKGGVSIIPLSGNKKL
Ga0181581_1032784613300017962Salt MarshMAKYTWSIAGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGAQVIPIESKDKVKKNV
Ga0181581_1056333613300017962Salt MarshMAKYTWSIAGKDDKIYKEGFTISNTKPRYRIGSKETADKFNKGGAQVIPIEPKK
Ga0181589_1003299523300017964Salt MarshMAKYTCSIAGKDVKTFKEGFTISNTKPRYRIGSKETADKFNKGGAQVIPIESKK
Ga0181589_1058841023300017964Salt MarshMAKFTWSIAGKNDKIFKEGFTISNIKPRYRIGSKETADKFNKDGVSIIPLSGN
Ga0181589_1077142423300017964Salt MarshVPKVLKQEVIMAKFTWSIAGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGVSIIPLSGNKKL
Ga0181590_1027974333300017967Salt MarshMAKYTWSIAGKDDKIYKEGFTLSNTKPRNRIGSKETADKFNKGGVQIIAISSRKK
Ga0181590_1041553533300017967Salt MarshMTKYTLTIAGKDDKIYKEGFTVSNTKPRYRIGSKETADKFNKGGVSIIPLSRKKEL
Ga0181590_1049631313300017967Salt MarshKYTLIKAGKDDKIFKEGFIISNTKPRYRIGSKETADKFNKGGVSIIPLLGKIKP
Ga0181587_1030048223300017968Salt MarshMTKYTLIIAGKDDKIYKEGFAVSNTKPRYRIGSKETADKFNKGGVSIIPLSRKKEL
Ga0181587_1051802623300017968Salt MarshVPKVLKQEVIMAKYTLIKAGKDDKIFKEGFIISNTKPRYRIGSKETADKFNKGGVSIIPLSGNKKL
Ga0181585_1070880823300017969Salt MarshVPKVLKQEVIMAKFTWSIAGKNDKIFKEGFTISNIKPRYRIGSKETADKFNKDGVSIIPLSGNKKL
Ga0181585_1086163323300017969Salt MarshMAKYTWSIAGKDDKIFKEGFTVSNTKPRYRIGSKETADKFNSGGVSVIPLSRKGKNHK
Ga0181576_1006253653300017985Salt MarshGIVPKVLKQEVNMAKYTLTKAGKDDKIFKEGFTISKTKLRYRIGSKETADKFNKGGVQVIPIESKDKATR
Ga0181576_1010438313300017985Salt MarshMAKFTCSIAGKDNKLFKEGFTTSNTKPRYRIGSKETADKFNKGGAQIIPIKKKQLRNDVF
Ga0181576_1023107423300017985Salt MarshMAKYTLIKAGKDDKIFKEGFTISKTKPRYRIGSKETADKFNKGGVSIIPLSGNKKL
Ga0181576_1045655133300017985Salt MarshMAKFTWSIAGKDDKIFKEGFIISNTKPRYRIGSKETADKFNKGGVSIIPLSGNKKL
Ga0181576_1069430413300017985Salt MarshMAKYTWSIAGKDDKIFKEGFTLSNTKPRYRIGSKETADKFNKGGAQVIPIESIDKVKERIFV
Ga0181576_1078165923300017985Salt MarshGIVPKVLKQEVNMAKYTLTIAGKDDKIFKEGFTVSNTKPRYRIGSKETADKFNSGGVSVIPLSRKGKNHK
Ga0181569_1014030543300017986Salt MarshMAKYTLTKAGKQDKIFKEGFIISNTKQRYRIGSKETADKFNKGGVQIIAISSRKK
Ga0181569_1024406113300017986Salt MarshMAKYTWSIAGKDDKIFKEGFTISNTKPRNRIGSKETADKFNKGGAQIVPVKSKAKGLKLATQEE
Ga0181569_1056091413300017986Salt MarshMVPKVLKQEVKMAKYTLTKAGKDDEIFKEGFTTSNIKPRYRIGSKETADKFNKGGAQVIPVESKNKG
Ga0181569_1081173123300017986Salt MarshMAKYTWSIAGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGAQVIPIE
Ga0181606_1037079233300018048Salt MarshMAKYTWSIAGKDDKIYKEGFTISNTKPRYRIGSKETADKFNKGGAQIVPVKSKAKGLKLATQKECDR
Ga0181572_1048695423300018049Salt MarshMAKYTLTISGKDDKIFKECFTVSNTKPRYRIGSKETADKFNSGGVSVIPLSRKGKNHK
Ga0181561_1041059313300018410Salt MarshMAKYTLTKAGKDDEIFKEGFTLSNTKPRYRIGSKETADKFNKGGCQIIPLSR
Ga0181558_1044687233300018417Salt MarshMAKYTWSIAGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGAQVIPIEPKNKI
Ga0181567_1000274813300018418Salt MarshMAKYTLIVADKDDKIYKEGFTITNTKPRYRIGSKETADKFNKGGVQI
Ga0181567_1005327853300018418Salt MarshMAKYTLTIAGKDDKIYKEGFTISNTKPRHRIGSKETADKFNKGGAQVIPIESKK
Ga0181567_1026249643300018418Salt MarshLGIVPKVLKQEVIMAKYTLTKAGKQDKIFKEGFIISNTKQRYRIGSKETADKFNKGGVQIITLSSRKR
Ga0181567_1055164413300018418Salt MarshVHLGIVPKVLKQEVIMAKYTLIKAGKDDKIFKEGFIISNTKPRYRIGSKETADKFNKGGVSIIPLLGKIKP
Ga0181567_1055335223300018418Salt MarshMAKYTLTIAGKDDKIYKEGFTVSNNNSSKPKLKLGTQEDADKFNKGGVSIIPLSRKKKP
Ga0181567_1076472613300018418Salt MarshKQEVKMAKYTLTKAGKDDEIFKEGFTISNIKPRYRIGSKETADKFNKGGAQVIPVESKK
Ga0181592_1047739143300018421Salt MarshMAKYTWSIVGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGAQVIPIEPKNKI
Ga0181592_1064750923300018421Salt MarshMAKYTLTKAGKDDKIFKEGFTISKKDNLKPRFKLGTQEGADKFNKGGVQVIPIRSKAKGLKFATQEEC
Ga0181592_1065076323300018421Salt MarshLGIVPKVLKQEVNMAKYTLTKAGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGAQVIPVESKNKG
Ga0181591_1008000443300018424Salt MarshMAKYTLTVADKDDKIYKEGFTITNTKPRYRIGSKETADKFNKGGVQIITLNHKK
Ga0181591_1029804633300018424Salt MarshVLKQEVIMAKYTWSIAGKDDKIFKEGFTLSNTKPRYRIGSKETADKFNKGGVSIIPLSGNKKL
Ga0181591_1089260113300018424Salt MarshMTKYTLTKAGKGDKIFKEGFTISNTKPRYRIGSKETADKFNKGGAQVIPIESKDKVKKNVFVLGTQEE
Ga0181566_1066143523300018426Salt MarshEVKMAKYTLTKAGKDDEIFKEGFTISNIKPRYRIGSKETADKFNKGGAQVIPVESKK
Ga0181566_1080546123300018426Salt MarshMAKYTLIKAGKDDKIFKEGFTISNTKPRNRIGSKETADKFNKGGVSIIPLSGNKKL
Ga0181568_1005515153300018428Salt MarshMAKYTWSIAGKDDKIFKEGFTISNTKPRNRIGSKETADKFNKGGAQIVPVKSKAKGLKLA
Ga0181564_1051499913300018876Salt MarshMAKYTLTIAGKDDKIYKEGFTISNTKPRYRIGSKETADKFNKGGAQVIPI
Ga0182066_105801723300019262Salt MarshMAKYTWSIAGKDDKIFKEGFTLSNTKPRYRIGSKETADKFNKGGAQVIPIESID
Ga0182066_115321823300019262Salt MarshMAKYTLTKAGKDDEIFKEGFTISNIKPRYRIGSKETADKFNKGGVSIIPLSRKKEL
Ga0182066_117990323300019262Salt MarshMAKYTLTKAGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGVSIIPLSGNKKL
Ga0182066_119125423300019262Salt MarshGIVPKVLKQEVNMAKYTLTVADKDDKIYKEGFTKSNTKPRYRIGSKETADKFNKGGVQIIAISSRKK
Ga0182073_158423623300019274Salt MarshVRLGIVPKVLKQEVIMAKYTWSIAGKDDKIFKEDFTISNTKPRYRIGSKETADKFNKGGAQVIPIEPKNKI
Ga0182067_162571223300019276Salt MarshGIVPKVLKQEVIMTKYTLTIAGNDDKIYKEGFTVSNTKPRYRIGSKETADKFNKGGVSIIPLSRKKEL
Ga0181570_1001514423300020207Salt MarshMAKYTWSIAGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGVSIIPLSGNKKL
Ga0181570_1015185033300020207Salt MarshMAKYTLTIAGKDDKIYKEGSTISNTKPRYRIGSKETADKFNKGGAQVIPIESKDKVKR
Ga0181570_1038255213300020207Salt MarshMAKYTWSIAGKDDKIYKEGFTISHTKPRYRIGSKETADKFNKGGVQVIPIESKDKVKKNVFVLGTQE
Ga0255781_1020868113300022934Salt MarshLGIVPKVLKQEVIMAKFTWSIAGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGVSIIPLSGNKKL
Ga0255770_1001156243300022937Salt MarshMAKYTLTKAGKEDKIFKEGFTLSNTKPRYRIGTKETADKFNKGGVQIITISSRKKEC
Ga0255770_1034947513300022937Salt MarshMTKYTLIIAGKDDKIYKEGFTVSNTKPRYRMGSKETADKFNKGGVSIIPLSRKKEL
Ga0255770_1046128513300022937Salt MarshMAKYTWSIAGKDDKIFKEGFTLPNTKPRYRIGSKETADKFNKGGAQVIPIESIDKVKERIFV
Ga0255754_1014804813300022939Salt MarshQEVNMAKYTLTIAGKDDKIYKEGFTISNTKPRYRIGSKETADKFNKGGAQVIPIESKK
Ga0255764_1037413613300023081Salt MarshMAKYTLTKAGKDDKIFKEGFTISKKDNLKPRFKLGTQEGADKFNKGGVQVIPI
Ga0255778_1042256213300023084Salt MarshRLGIVPKVLKQEVIMAKYTLIKAGKDDKIFKEGFTISKTKPRYRIGSKETADKFNKGGVSIIPLSGNKKL
Ga0255782_1006232643300023105Salt MarshMAKYTLTKAGKQDKIFKEGFIISNTKQRYRIGSKETADKFNKGGVQIITLSSRKR
Ga0255782_1036622313300023105Salt MarshMAKYTWSIAGKDDKIFKEGFTLPNTKPRYRIGSKETADKFNKGGAQVIPI
Ga0255784_1029891013300023108Salt MarshVPKVLKQEVIMAKYTWSIAGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGAQVIPIEPKNKI
Ga0255743_1011377633300023110Salt MarshMAKYTWSIAGKDDKIFKEGFIISNTKPRYRIGSKETADKFNKGGVSIIPLLGKIKP
Ga0255743_1021535413300023110Salt MarshLVRLGIVPKVLKQEVIMAKYTWSIAGKDDKIFTEGFTISNTKPRNRIGSKETADKFNKGGVSIIPLSGNKKL
Ga0255743_1024585613300023110Salt MarshMAKYTLTKAGKQDKIFKEGFIISNTKQRYRIGSKETADKFNKGGV
Ga0255760_1028437833300023115Salt MarshLKQEVIMAKYTLIKAGKDDKIFKEGFIISNTKPRYRIGSKETADKFNKGGVSIIPLLGKIKP
Ga0255751_1025075133300023116Salt MarshGKDDKIYKEGFTVSNTKPRYRIGSKETADKFNKGGVSIIPLSRKKEL
Ga0255751_1032081133300023116Salt MarshEVIMAKYTWSIAGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGVSIIPLLGKIKP
Ga0255751_1037889013300023116Salt MarshMAKYTLTKAGKDDKIFKVGFTISNTKPRCRIGSKETADKYNQGGCQIIPLSRKRKFS
Ga0255762_1000657943300023119Salt MarshMVKYTLTKAGKKDKIFKEGYTISNTKPRYRIGSKETADKFNKGGVQIIAISSRKK
Ga0255762_1057016323300023119Salt MarshMAKYTWSIAGKDDKIYKEGFTLSNTKPRNRIGSKETADKFNKGGVSIIPLSGNKKL
Ga0255761_1004452543300023170Salt MarshMAKYTWSIAGIGDKLYKEGFTISNTKPRNRIGSKETADKFNKGGVQIIAISSRKK
Ga0255766_1031083623300023172Salt MarshLVRLGIVPKVLKQEVNMAKYTLTKAGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGAQVIPVESKNKG
Ga0255777_1033699423300023175Salt MarshMAKYTWSIAGKDDKIYKEGFIISNTKPRYRIGSKETADKFNKGGVSIIPLLGKIKP
Ga0255772_1034762513300023176Salt MarshTWSIAGKDDKIFKEGFIISNTKPRYRIGSKETADKFNKGGVSIIPLLGKIKP
Ga0255772_1040543913300023176Salt MarshMAKYTWSIAGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGAQVIPIEPK
Ga0255759_1078462923300023178Salt MarshMAKYTWSIAGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGVSIIPLSG
Ga0255768_1008171413300023180Salt MarshMAKYTWSIAGKDDKIFKEGFTISNTKPRYRIGSKETADKFNKGGAQVIPIESKDK
Ga0255768_1034099833300023180Salt MarshPKVLKQEVIMAKYTWSIAGKDDKIYKEGFIISNTKPRYRIGSKETADKFNKGGVSIIPLLGKIKP
Ga0255768_1049476713300023180Salt MarshMAKYTWSIAGKDDKIFKEGFTISNTKPRNRIGSKETADKFNKGGAQIVPVKSKA


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