Scaffold Ga0180437_10379663

Overview

Basic Information

• Taxon OID: 3300017963
• Scaffold ID: Ga0180437_10379663
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1059
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.3
  • Long. (^o): -115.8
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019319	Metagenome	230	N
F037220	Metagenome / Metatranscriptome	168	N
F040082	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180437_103796631	F040082	AGGAG	MTGDTFAMSQEIIELQTRVAELSVALEHMTEQRDNALDAAESLHQELEACRDRIKSLGGQLDRLRVHIQQGIEL
Ga0180437_103796632	F019319	N/A	MEVGMTKKDIQDAIAFLERQFVGVGEQDRLFEVIAALKQELDRRSKK
Ga0180437_103796633	F037220	GAGG	MSDEQDLLAGGGPKLPSLKFEKIGDVHSGIVTDVKKLEDRDPAGVAKTWPNGDPRFVYVITLKTEKEGDANLWARGAMITAIREAAKQASVTELTGNKISVKYSADGEKKAGFNAPKLFAAKVEKVATDDRW