NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180437_10109173

Scaffold Ga0180437_10109173


Overview

Basic Information
Taxon OID3300017963 Open in IMG/M
Scaffold IDGa0180437_10109173 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2319
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3Long. (o)-115.8Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F002738Metagenome / Metatranscriptome533Y
F013517Metagenome / Metatranscriptome270Y
F025982Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0180437_101091732F002738N/AMAIDTYGLPFEQYEEFFDKNIRSAAKLYLKTCNILNEEGAGHVDFKTILDIYQETVYAANDDCRRYQKGNSPEALKDSDLYNISPTREEIMEEVQSVNAKVEALTDYISNLITVTTAGLEGIVTTLDDKVD
Ga0180437_101091733F013517N/AMFETLLATVLPVMKDLLWAAAGVALSYLLNKLQGFYGSIN
Ga0180437_101091735F001018N/AMTQITQAKLKELSIIKLYEHYRALEQSLPLLIPESQELAQAELEACANLRSEKVDRIYYAMAAHEDALERIKKEEELITQAKRHHESQLKSLKGLLNYLRRVLPMDTNKITGRNYQFTLVKKKELTVEISTDPEFWHTKDRELYCITEEVTTTKRVVLRSMSGDILDERIEPKTTTKVLPNLDAIRSAYQEGQHLPNGVKVQQEYSVRSKRIFSEPRMELATSEYPAELLREDSSAD
Ga0180437_101091736F025982N/AMSCHEHAIKDFDLQLEMNGLQMDMLMEDSKVLDYHMTEYEDLEQKKLKLLVGKRFHQNACNAYWYWIQREKSGK

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