Scaffold Ga0180437_10109173

Overview

Basic Information

• Taxon OID: 3300017963
• Scaffold ID: Ga0180437_10109173
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2319
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.3
  • Long. (^o): -115.8
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002738	Metagenome / Metatranscriptome	533	Y
F013517	Metagenome / Metatranscriptome	270	Y
F025982	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180437_101091732	F002738	N/A	MAIDTYGLPFEQYEEFFDKNIRSAAKLYLKTCNILNEEGAGHVDFKTILDIYQETVYAANDDCRRYQKGNSPEALKDSDLYNISPTREEIMEEVQSVNAKVEALTDYISNLITVTTAGLEGIVTTLDDKVD
Ga0180437_101091733	F013517	N/A	MFETLLATVLPVMKDLLWAAAGVALSYLLNKLQGFYGSIN
Ga0180437_101091735	F001018	N/A	MTQITQAKLKELSIIKLYEHYRALEQSLPLLIPESQELAQAELEACANLRSEKVDRIYYAMAAHEDALERIKKEEELITQAKRHHESQLKSLKGLLNYLRRVLPMDTNKITGRNYQFTLVKKKELTVEISTDPEFWHTKDRELYCITEEVTTTKRVVLRSMSGDILDERIEPKTTTKVLPNLDAIRSAYQEGQHLPNGVKVQQEYSVRSKRIFSEPRMELATSEYPAELLREDSSAD
Ga0180437_101091736	F025982	N/A	MSCHEHAIKDFDLQLEMNGLQMDMLMEDSKVLDYHMTEYEDLEQKKLKLLVGKRFHQNACNAYWYWIQREKSGK