Basic Information | |
---|---|
Taxon OID | 3300017963 Open in IMG/M |
Scaffold ID | Ga0180437_10109173 Open in IMG/M |
Source Dataset Name | Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2319 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 33.3 | Long. (o) | -115.8 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001018 | Metagenome / Metatranscriptome | 804 | Y |
F002738 | Metagenome / Metatranscriptome | 533 | Y |
F013517 | Metagenome / Metatranscriptome | 270 | Y |
F025982 | Metagenome / Metatranscriptome | 199 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0180437_101091732 | F002738 | N/A | MAIDTYGLPFEQYEEFFDKNIRSAAKLYLKTCNILNEEGAGHVDFKTILDIYQETVYAANDDCRRYQKGNSPEALKDSDLYNISPTREEIMEEVQSVNAKVEALTDYISNLITVTTAGLEGIVTTLDDKVD |
Ga0180437_101091733 | F013517 | N/A | MFETLLATVLPVMKDLLWAAAGVALSYLLNKLQGFYGSIN |
Ga0180437_101091735 | F001018 | N/A | MTQITQAKLKELSIIKLYEHYRALEQSLPLLIPESQELAQAELEACANLRSEKVDRIYYAMAAHEDALERIKKEEELITQAKRHHESQLKSLKGLLNYLRRVLPMDTNKITGRNYQFTLVKKKELTVEISTDPEFWHTKDRELYCITEEVTTTKRVVLRSMSGDILDERIEPKTTTKVLPNLDAIRSAYQEGQHLPNGVKVQQEYSVRSKRIFSEPRMELATSEYPAELLREDSSAD |
Ga0180437_101091736 | F025982 | N/A | MSCHEHAIKDFDLQLEMNGLQMDMLMEDSKVLDYHMTEYEDLEQKKLKLLVGKRFHQNACNAYWYWIQREKSGK |
⦗Top⦘ |