Scaffold Ga0180437_10001278

Overview

Basic Information

• Taxon OID: 3300017963
• Scaffold ID: Ga0180437_10001278
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43373
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (41.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.3
  • Long. (^o): -115.8
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011477	Metagenome / Metatranscriptome	290	Y
F018881	Metagenome / Metatranscriptome	232	Y
F053086	Metagenome	141	Y
F074796	Metagenome / Metatranscriptome	119	Y
F077031	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180437_1000127846	F077031	N/A	MKKRPNFLVLFNLKISRKASIVAVAIASFLAFLTVKCDISEKDILKYYNELRKLIKWDLPDNIIDEVDNQLNNLINRDPKLLQQKIENEVDYAIISYEIEEQKNRVINMKNKNILEEINKPKYDTLQKLIVQNAIYYEFADGTMGIRGAWVAPDPREIPFE
Ga0180437_1000127848	F074796	N/A	MSKNLPQEPEKIIDIASKVEYLKVDTNLGEIKLNSHNSVEFQPDGTIFGTKIKVEENGNITPTLTFDTKKLEEPKNNIDNIHINKLVDDAIDDFWERA
Ga0180437_1000127852	F018881	GGA	VNPKIILQDSNYDEWCEEEILNAYKDAAEYDDFLFGDHDYSYIWLNGKSIIPSKLG
Ga0180437_1000127860	F011477	GAGG	MSLAVIWAWVLANEAALATILLILSELLGAVPAVKSNGLVSFVIIQTQKLLKDKGAKDPT
Ga0180437_100012788	F053086	N/A	VPKSPNKGKKDCTGGKHPKQNQGNATAKKGKNGGKKR