Scaffold Ga0180437_10000135

Overview

Basic Information

• Taxon OID: 3300017963
• Scaffold ID: Ga0180437_10000135
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 156395
• Total Scaffold Genes: 141
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 117 (82.98%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.3
  • Long. (^o): -115.8
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024951	Metagenome	203	Y
F049073	Metagenome / Metatranscriptome	147	Y
F068265	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180437_1000013563	F024951	AGGAG	MRKVTVKLEMKVVMLVDDGVEVSEVVNELDYTVNDTTTAADILDAEITDYEVIDSV
Ga0180437_1000013571	F049073	GGAGG	MNRTIRKQIVFALEDDNEVMTAALEPDSDLDKENKRLNRLLIKRHEAILTKIEKGQPLTQEDLVLIRDANEIHVNDVQNLNGRHRQAIALDEWLDNMIELSKEEAMKILETHLDKDTHTPAKVYRALHTLWEEATPDDVAMEPGFDEGGKCLKCGSKVSFADVTDTVVFVGDEIVKRYDGDITNRNCVRCKYPDQYHDFEHFDGDDP
Ga0180437_1000013580	F068265	GAGG	MAKRKQSAAVPVKDAMFFPEDFTRLHRRHVIFIKKGVIIDLDKLK