Scaffold Ga0181580_10047286

Overview

Basic Information

• Taxon OID: 3300017956
• Scaffold ID: Ga0181580_10047286
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3270
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040673	Metagenome / Metatranscriptome	161	Y
F051183	Metagenome / Metatranscriptome	144	N
F097161	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181580_100472863	F051183	AGGAG	MAITGTKVKTNTSNKNWFVNQCRIVEAEQIDSQYNDCSIRLKLEDKDNGYNYTTFINQNFEKDVNGIVTGMAYPEDLNTLYLASGKDINVSDVGEVNVDTLIDSEIAVINYAASGKYKRATWGVVSSPNDTAELEKKFMAQIAKGYPKNYQQPQDTMVEEMLGNREPAKTETVDDLPF
Ga0181580_100472868	F097161	GGAG	VKSRNNITLHDDGPIDASIRIDIYYSFDEETGYYLDTDSITAEFEERLSEIEDDISNLNHERDEHLRLKHMEG
Ga0181580_100472869	F040673	AGGAG	MSKNKTMDDMWVCDYCGSEEVDEKAWVNMNTLECVEGIDDNTYWCNNCNDEVAPLTYFEWQEKIAEECGGNKDKYDEIMDGSRM