Scaffold Ga0187817_10135777

Overview

Basic Information

• Taxon OID: 3300017955
• Scaffold ID: Ga0187817_10135777
• Source Dataset Name: Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1561
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.9061
  • Long. (^o): -76.1569
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003832	Metagenome / Metatranscriptome	466	Y
F025325	Metagenome / Metatranscriptome	202	Y
F058360	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187817_101357771	F058360	N/A	AYNAVTLVWIGYLKQQPKLLPRVIAMPVSPRGMVLAASAAVPDTDAGFMLRVEQAVDRVLSRSDWPRPVTNGPQIVSRKPNPEEGN
Ga0187817_101357772	F003832	N/A	MMKSTAEQLRSTANWPPERGEIVSFKSSNGPETAMLKEVRWGLVWRDFILEDGRVIPEHRVSGCPRPQAWRKISEVTDREREECEERLLLMAGAGMDPRKRDQSFWAELNQYLAYTYLRYKRAGSEAHVTE
Ga0187817_101357774	F025325	AGGAGG	MLSDGSKQPGKSWEELAAAAVMETDPEKLATILEEILAALEERERTLSQPPNPSSVRKTS