Scaffold Ga0181577_10017438

Overview

Basic Information

• Taxon OID: 3300017951
• Scaffold ID: Ga0181577_10017438
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5285
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012041	Metagenome	284	Y
F018208	Metagenome / Metatranscriptome	236	N
F100032	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_100174382	F100032	GGAG	MGILVEQKKEEFIGQGFSKKEARTKAHEWCRQTNTCRGCSQAVKPDQWSKSFKGEGYCIGCMG
Ga0181577_100174383	F018208	GAGG	MKRILEDFEYIYFFKDAFNSKLIGRPYLMNENGFNEDEIKEAKEFIKKNGTKFYTVDDDDLDKTEGYYYSKDGIDFPPLDKMMADSGHTKLYYYENNKWSLL
Ga0181577_100174387	F012041	GGA	MTKKYRVTLEVDSEWIKNFDLSFDADSEQEAEAQALTEVKMNLSDYITAYAEEVEEATSDDKAKAHK