Scaffold Ga0181607_10093539

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10093539
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1912
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010465	Metagenome	303	Y
F054687	Metagenome / Metatranscriptome	139	Y
F073285	Metagenome	120	Y
F091843	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_100935393	F073285	N/A	MKLKYLLIGANHGHDEIVKIFKADTSIDVINNHLKAYLSEIECLQDLTDRFDAIQKTNGIDDTFHVIKYYLMETRDTFVTIQETELCQSPNT
Ga0181607_100935394	F091843	AGGA	MSVTEYLTDHTGRKIAFFYYIDSERYSVAPKLVWQCRDHRQYSGTCASKEEAFEAFKAVLKELKKKVPSQTCDTCGLTSPKMEAQDTCPDCLTDE
Ga0181607_100935395	F054687	N/A	MNNNLTDPSKLETLDDISIQTLIDHYLSVREKLPTSLRVRDRLLELQQELLSRQPSTIEGMIRQTTDNPIK
Ga0181607_100935396	F010465	N/A	MKETLLDPIDMTQELMFHIFNNDMNRELDGRWLDLYLSLQLYKEHLEKLEDE