Scaffold Ga0181607

Basic Information
Taxon OID	3300017950 Open in IMG/M
Scaffold ID	Ga0181607_10014217 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6259
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (73.68%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

6259

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (73.68%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002594	Metagenome / Metatranscriptome	545	Y
F004220	Metagenome	448	Y
F019311	Metagenome	230	Y
F027183	Metagenome / Metatranscriptome	195	N
F062710	Metagenome	130	N
F066824	Metagenome / Metatranscriptome	126	N
F082722	Metagenome / Metatranscriptome	113	N
F084306	Metagenome / Metatranscriptome	112	N
F095507	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_1001421712	F002594	N/A	MAKIPTSRLNTAPKEYEKIDFDQLIEDLQDMIKLLNTTYPKDIVDEEDKKTWFLMRGN
Ga0181607_1001421713	F084306	GGAGG	MSKALLDKLSQKRNLEAQWASEFIANGSVTVKMVELGKKIGQLAQELKEDSEIKA
Ga0181607_1001421714	F066824	N/A	MLVHFKFYRCGYFAEGLVEKDNLDDAAEALWKEHPKTFKWTDIQGPDNENRLTLEEWNEQGSTRQVESEAKPRSPVG
Ga0181607_1001421716	F019311	AGG	MNHTFKHPSKYKKEVKETKYVPIRECKVGKKYRFEEHEHTVVDYEYNYSYMTGTCVTNEPGPNIVFGKKEQLIEIKLDFPRPELQGEFDNKLMFFFPHDEAMYDDVKVVEYE
Ga0181607_1001421718	F027183	AGGAG	MANCRECWDDGYIWTHPSGSDFDKPRFEKCDACGIFKDDNEAQAKANSRSYYVVWWNGYNVNKDGKPHSSEIRHEDITENNGWHEEDIDEISSLSIGEKYNTGGPIEQVTLFRWK
Ga0181607_1001421719	F082722	AGGAG	MIRKCGNCKREEDHEGQFDCEDWSEDQAVILCDDCFFNDLYKKGESNG
Ga0181607_100142174	F095507	AGGAG	MDAKYRGFEIKYLGGGFQLYEGGFLKETHSCQDDTATKRYKSMQRIDAIHRHRRQEDDRSIERVDAQVRATRDMGV
Ga0181607_100142178	F062710	AGGAG	MATTVKVTFRISVPAQKEFKIVDKELWKNSKNDFVSALNDEDGKELIVSDYLEMYGLEPIDDSYSEDDPNREFECIEKIIDETGKSI
Ga0181607_100142179	F004220	AGGAG	MVEKDKLDWCYYFKSILWRPNNSGWIRLCSKNSIEGFSISTKQTKVRDHYKKIADSGVEFYTCDDDDLDKEYGMYYGNLEFDPLDIMESYSGHTKMFHKENGEWRQL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181607_10014217

Overview

Ecosystem & Geography

Associated Families

Sequences