Scaffold Ga0181607_10001692

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10001692
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19681
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (69.44%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F002221	Metagenome	581	Y
F006845	Metagenome / Metatranscriptome	363	Y
F008346	Metagenome	335	Y
F008595	Metagenome / Metatranscriptome	331	Y
F009521	Metagenome / Metatranscriptome	316	Y
F013088	Metagenome / Metatranscriptome	274	Y
F018155	Metagenome / Metatranscriptome	236	Y
F036651	Metagenome / Metatranscriptome	169	N
F058166	Metagenome / Metatranscriptome	135	N
F067646	Metagenome	125	Y
F094536	Metagenome	106	N
F099546	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_1000169212	F094536	AGG	MRIVLKSNLRQVRKELDRSLNKKDFNKIMARAMNYTGEKIVNAERSHLHDKLDKPRPQTIKSVVISQFAKPSSSKLAMTVRVKDWAAKYLHYIYSGDDEPARNRGYPSPTRDGLPKQGKFGNIVKLSKKGGLLSRIDKTTDSQRKGSRFQGVPKGQGSKVYGIWERQGVKGRDGLKLLVAYTPFIKHRKFIDFFKVGEMVVKNNLHKELHKQFLRHMKKR
Ga0181607_1000169213	F099546	N/A	MSNKPQIDVSQLKRQIDKGKSLNEVVMSLGRSKSTILKVANENGLKFDKKSHWANL
Ga0181607_1000169216	F008346	N/A	MPIKLKPSAKIRDRATGKLSIEHYYLKCMTIAELNDYIESPSAKKKVIQKCRNELVRRSK
Ga0181607_1000169218	F002221	AGGA	MSNYLEESLKDKLKELRIYEAETQVKWGNWKRIYKMVGVDFEIKFLKAEQMLKTSLREDSPKKQIAMVEMMMRAYEQLNIKCEESGYIMIQPNAKCFTFDKKTALVCDTDDEKPVLELIHKEEKDIMIFSIEELLRCIPTDFMRAKELLSKLDKSVNIQRVDYD
Ga0181607_1000169220	F058166	AGGAG	MDILGGMSNSNGDSKDYYLAFKTADQKFFVNGKTPIDIKYLQLDPATFKSGWGRYAGEYQYQWDSKFGQASPKPADDWKRAFSCVVMPFGHEHALIWSRFTYAESSAFNKILTGFWNQMDANSGSLPVVEYLGSKEIQVGIGRSSELDFKFNKFAPRFDGFEIPPFYDNDGDTSEDDGFKSPNEGLADKVAEMVSQNELTDDDIPF
Ga0181607_1000169221	F006845	AGG	MKSYKRQMDLNSYLLEQDFEDYCRFAYDKIQSACEFLGIINDEDYESFKERCYTQLETDYLNSIEKTIH
Ga0181607_1000169223	F067646	AGGA	MLDWILYFIAGIFGLVFIGAIISVIAAVYILNELD
Ga0181607_1000169224	F018155	GAG	MGQNKAAVEKRRKELEQEKLDKQIKYYYFQKGAGEHYREIQYMSGKIVRTRFDA
Ga0181607_1000169225	F013088	AGGAG	MDEKIKKALWISDDLHKEIKIFAIKNNMNIETATQMVLKLGMVSYKESKKNGSK
Ga0181607_1000169228	F036651	N/A	MREITLNEVGKTKPLILAKRQIRGYYRDVFTGENKVQVDDKEYIVRDSLTEIAYLMGVNT
Ga0181607_1000169230	F001942	N/A	VPRKTSDQHQNNSRLGALGESLVQTFLLEYADFCYPTQEKHPADLLMEVSGGKYTVQVKSRRATKEKKFVFAAENSRSMSETYKNYRCDILAFVFFYDDEKRIMFKANTSSQNYFTFDKKSITDNMELDSLKETLDALNSVPVLNSII
Ga0181607_1000169234	F008595	AGGAG	MSKEENKMENQEPVIITFNGKEYRASDLNEEQMALAAKLNVAGKKLARLQEYYDDYVITNEYKNLVIESFDRAINAEEEVEVVEEK
Ga0181607_100016927	F009521	AGGGGG	MKYKIIINSGTLKGFLAFRGSCLATMQDKYKRLQNQGHKLKLIRGE