Scaffold Ga0181607_10000433

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10000433
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35989
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (78.43%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001739	Metagenome	643	Y
F002997	Metagenome / Metatranscriptome	514	Y
F022651	Metagenome / Metatranscriptome	213	Y
F024506	Metagenome / Metatranscriptome	205	Y
F038150	Metagenome	166	Y
F092064	Metagenome / Metatranscriptome	107	Y
F096620	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_100004331	F092064	GGA	MRAAPRQIIEFIRNPAAWDAKAFETAIRNEVENNTGNITASDELLIGLLVMVVETMITANLQIIDNGPIYEYNSGDAPSPWYKIRTESLDKAIKILAELALVARGRPKKSNKVSDVDELFATA
Ga0181607_1000043314	F022651	N/A	MTQHTTIQNTSDLLSFLVNQSEIRKDWFGFTQQRMTAVTLAHEIAASHAHHMTPAQVVAYALALNNEIYNKIIKG
Ga0181607_1000043320	F001739	N/A	MTTFTTTITAMYTLQQPDPNYVVNALWQVTGVDGSNTASIGGNTQFDSQQGAVFIPYDQLTEAVVIGWIPESAITSAQACVQGQIDSMITPPVSPANTPLPWAA
Ga0181607_1000043324	F024506	GGA	MSLQTILSIAETVAINDHKFAGQMLSRNMRISTSEILTVQPFQFTIKPNDYLLYSQNRAVLSALRVADRVAEQYLNYASTGWVNYIAYQGDMSAVQAAAVTVQAASSGKTIVLGTLPSITSTLFIVKAGDFIQVGRYAYIATANVTRGGGSTVNVPVHRSLIDAPTIGMLAVIGQYGTTVALGGSTYTGITFPVIVRDYPTYTLVPMTNDSFIAWSNAFSAMEVVL
Ga0181607_1000043329	F038150	GGAG	MTDDDFRRLESKVDKLTDAVGKLILFEERQANQGAKIVAFETQLSVHESMLHRTDRKVDQWVNRGVGIWAAAAIVFSFVQFWRK
Ga0181607_1000043335	F096620	AGGAG	MTPKFTQLLEKCILDGVVLGHKRAYKHNNAPSESDINQSIVNEVLTEIYEWFDFDDAKLKEKNHDL
Ga0181607_100004338	F002997	N/A	MAIARFENLSVNNLAFGKSTFGEQSTAQTVWFTTRGRVHSVANHVKITDKYRVYSDIVEFTLNYTPNIKTIVDNQNAYSITWRGFDWRIDNVREADDRMTAMFMCVRNDPVVAV