Scaffold Ga0181584_10122043

Overview

Basic Information

• Taxon OID: 3300017949
• Scaffold ID: Ga0181584_10122043
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1767
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F062169	Metagenome / Metatranscriptome	131	N
F069451	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181584_101220431	F006383	GGAGG	MLIKDKMWKVQQPGTILRARHSARRGQLALVLARAKPGPRPSNGYPPTEYVKMQMVSTGERIEESLTNANNCWDIVSEP
Ga0181584_101220433	F069451	GGAGG	MNPGDLVRIRKTAIDEYSTDWFIYLAEKKAPLLLMEKINEQHWKVMRPDGSTCFLSERKLTKRLW
Ga0181584_101220435	F006867	GGAG	MLYGEELLKSIQNRCRIQPGMLIRSRPEGFGENAPHGGKVALVTKVSPGCKFDRDYEGAEEHIFYVCEPFDGTNEFVDYVCNMEQVS
Ga0181584_101220436	F062169	AGGAG	MSVQEHIENILNAEGQAALDAWYVAIHEHPQSSMDIHDEVVDHLVANTFMY