NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181584_10122043

Scaffold Ga0181584_10122043


Overview

Basic Information
Taxon OID3300017949 Open in IMG/M
Scaffold IDGa0181584_10122043 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1767
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006383Metagenome374Y
F006867Metagenome / Metatranscriptome363Y
F062169Metagenome / Metatranscriptome131N
F069451Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0181584_101220431F006383GGAGGMLIKDKMWKVQQPGTILRARHSARRGQLALVLARAKPGPRPSNGYPPTEYVKMQMVSTGERIEESLTNANNCWDIVSEP
Ga0181584_101220433F069451GGAGGMNPGDLVRIRKTAIDEYSTDWFIYLAEKKAPLLLMEKINEQHWKVMRPDGSTCFLSERKLTKRLW
Ga0181584_101220435F006867GGAGMLYGEELLKSIQNRCRIQPGMLIRSRPEGFGENAPHGGKVALVTKVSPGCKFDRDYEGAEEHIFYVCEPFDGTNEFVDYVCNMEQVS
Ga0181584_101220436F062169AGGAGMSVQEHIENILNAEGQAALDAWYVAIHEHPQSSMDIHDEVVDHLVANTFMY

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