Scaffold Ga0182238_1023266

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182238_1023266

Scaffold Ga0182238_1023266

Overview

Basic Information
Taxon OID	3300017922 Open in IMG/M
Scaffold ID	Ga0182238_1023266 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 6_PW_90
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	902
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Fracking Water → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Texas
Coordinates	Lat. (^o)	30.238	Long. (^o)	-102.628	Alt. (m)		Depth (m)	2000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F102255	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182238_10232661	F102255	GGAGG	LKLQAIQRMVKNKVLLRGESGTGKTHCALMVSFLFSEHGKKVCYVDPEWGCQKEIVELVNAGEIGEEQIENIEIYVTPKWRTGTVKEIDEGVYIGGFTDVFDRLQGDLIVIDSMSELMAIHKNYLEQKFIAQGYYIPKEKEVEIKDPDTFTLPFQHYTKIYDELL

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