3300017922: Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 6_PW_90

Overview

Basic Information

• IMG/M Taxon OID: 3300017922
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118431 | Gp0208780 | Ga0182238
• Sample Name: Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 6_PW_90
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 96657288
• Sequencing Scaffolds: 5
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales → Desulfurococcaceae → unclassified Desulfurococcaceae → Desulfurococcaceae archaeon	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Fastidiosipila → unclassified Fastidiosipila → Fastidiosipila sp.	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Fracking Water → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → fracking liquid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: Texas
• Coordinates
  • Lat. (^o): 30.238
  • Long. (^o): -102.628
  • Alt. (m): N/A
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000388	Metagenome / Metatranscriptome	1201	Y
F027047	Metagenome	196	Y
F043719	Metagenome	155	N
F045470	Metagenome	152	N
F064264	Metagenome	128	N
F066220	Metagenome	127	N
F079441	Metagenome	115	N
F094638	Metagenome	105	N
F102255	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0182238_1001416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	6313
Ga0182238_1003485	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales → Desulfurococcaceae → unclassified Desulfurococcaceae → Desulfurococcaceae archaeon	3487
Ga0182238_1015284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Fastidiosipila → unclassified Fastidiosipila → Fastidiosipila sp.	1265
Ga0182238_1023266	Not Available	902
Ga0182238_1034850	Not Available	641

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0182238_1001416	Ga0182238_10014162	F079441	MRLESYELVEQLKTLNENIRTLNSILKDWANITNRIDEQIRLLETQRYSSKYWQFEPIEHYDLETLQPGEVTNLLSTTESGAFVLFGSFTTSDKVYWEVRADDLVIKGTIEDLYNYGLIGYNPRTLWISAGNGGYAVWATPNPYIEYRNKIQVYGKNIGDTEIQYNYIIFRYKYIGGD
Ga0182238_1001416	Ga0182238_10014163	F043719	MLRNISKFAEFTAAATDTIVHTVSTNRKAVITNIIVTNKESADILVTLYDGASTGEDKKLEIKVATGDTKVISLEDEYGIEFRTSVVAQVDSYTSGSSIWVGGYEA
Ga0182238_1001416	Ga0182238_10014164	F045470	MVFEEFKPVVSPRMNVRVLPDYGFYRVLSVDPVGVLIKDFGKTLAADAESKNNELEEVYMQDNEMAQWRIWVLDPVGIKLKVVGQEKLRGATKYSTSEIRSFSPETNDDDGISQFFSFEDEKIYVDIVNLTKDTLTSQRIKLIGYKYVLEKIDHTPEIYTDIPFGLVR
Ga0182238_1001416	Ga0182238_10014168	F066220	MGLFVNVRELSVRELMDLARSNENSVAYTPFGRFGLRTYIRRAAPWKGLKGDAFWDEAKKHGNLANGLRSAIDISRRFAGNTGVALVKYMDGSYGIMPYKSALQGQGKTIADIIATAPNYFRLITRPEASELIKAAKLQPVVY
Ga0182238_1003485	Ga0182238_10034853	F027047	MEVGSLIIAVFSAVVYALSMYVKKHLNKENPQDFDVAKFTTTVIWGAIIGVVLQYSGVGITEQTVEQQFITYTGLIAITENIVRAIIRSIRRRRSWSTTILAI
Ga0182238_1015284	Ga0182238_10152841	F000388	MKVIKVTKEYFETEDEKVYFFEPLGKEILVDDLQKIVDANEKLVKELKGGVRRADWIESDIKTTTREESY
Ga0182238_1022001	Ga0182238_10220011	F064264	NEPFTFAGATITYGGVEVAKVQAMDVDITTGFELIYALGQRTAVDGIARAFEVGGRISAVAIDDTFVKDTLGVGADATAPDELGVATETSIVITLTNDTDTKTLTIGGVVIDDLGSSIEANELILFDATYVGRTLTIESPTTA
Ga0182238_1023266	Ga0182238_10232661	F102255	LKLQAIQRMVKNKVLLRGESGTGKTHCALMVSFLFSEHGKKVCYVDPEWGCQKEIVELVNAGEIGEEQIENIEIYVTPKWRTGTVKEIDEGVYIGGFTDVFDRLQGDLIVIDSMSELMAIHKNYLEQKFIAQGYYIPKEKEVEIKDPDTFTLPFQHYTKIYDELL
Ga0182238_1034850	Ga0182238_10348501	F094638	DNEVVRELTKLSTKMDMVCADISELKTMTRNFLERLTILEERVRSLEDWKDEVTKYDRLKERVKYDFRSAVAGGVAGGLVGVVGSYLIKLMWG