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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017922 Open in IMG/M |
| Scaffold ID | Ga0182238_1001416 Open in IMG/M |
| Source Dataset Name | Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 6_PW_90 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6313 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (86.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Fracking Water → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Texas | |||||||
| Coordinates | Lat. (o) | 30.238 | Long. (o) | -102.628 | Alt. (m) | Depth (m) | 2000 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F043719 | Metagenome | 155 | N |
| F045470 | Metagenome | 152 | N |
| F066220 | Metagenome | 127 | N |
| F079441 | Metagenome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0182238_10014162 | F079441 | N/A | MRLESYELVEQLKTLNENIRTLNSILKDWANITNRIDEQIRLLETQRYSSKYWQFEPIEHYDLETLQPGEVTNLLSTTESGAFVLFGSFTTSDKVYWEVRADDLVIKGTIEDLYNYGLIGYNPRTLWISAGNGGYAVWATPNPYIEYRNKIQVYGKNIGDTEIQYNYIIFRYKYIGGD |
| Ga0182238_10014163 | F043719 | GAGG | MLRNISKFAEFTAAATDTIVHTVSTNRKAVITNIIVTNKESADILVTLYDGASTGEDKKLEIKVATGDTKVISLEDEYGIEFRTSVVAQVDSYTSGSSIWVGGYEA |
| Ga0182238_10014164 | F045470 | GGAGG | MVFEEFKPVVSPRMNVRVLPDYGFYRVLSVDPVGVLIKDFGKTLAADAESKNNELEEVYMQDNEMAQWRIWVLDPVGIKLKVVGQEKLRGATKYSTSEIRSFSPETNDDDGISQFFSFEDEKIYVDIVNLTKDTLTSQRIKLIGYKYVLEKIDHTPEIYTDIPFGLVR |
| Ga0182238_10014168 | F066220 | AGG | MGLFVNVRELSVRELMDLARSNENSVAYTPFGRFGLRTYIRRAAPWKGLKGDAFWDEAKKHGNLANGLRSAIDISRRFAGNTGVALVKYMDGSYGIMPYKSALQGQGKTIADIIATAPNYFRLITRPEASELIKAAKLQPVVY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |