Scaffold Ga0189787_10071

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0189787_10071

Scaffold Ga0189787_10071

Overview

Basic Information
Taxon OID	3300017828 Open in IMG/M
Scaffold ID	Ga0189787_10071 Open in IMG/M
Source Dataset Name	Saline water viral communities from hypersaline pond near village of Ngallou, Senegal ? P8
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	GATC-Biotech AG, Konstanz, Germany
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10739
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (19.05%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified → Saline Water → Archevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses

Source Dataset Sampling Location
Location Name	village of Ngallou, Senegal
Coordinates	Lat. (^o)	14.0491	Long. (^o)	-16.7624	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062484	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0189787_1007117	F062484	AGGAGG	MYLIGSKSKVQTYIAKVDKHEGFTGDITKTWAEPRKHPSKELYAVQKNMSVEPDSNLEEKEELPSDWQAELK

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