NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0189788_1145

Scaffold Ga0189788_1145


Overview

Basic Information
Taxon OID3300017827 Open in IMG/M
Scaffold IDGa0189788_1145 Open in IMG/M
Source Dataset NameSaline water viral communities from hypersaline pond near village of Ngallou, Senegal ? P9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGATC-Biotech AG, Konstanz, Germany
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3695
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Saline Water → Archevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses

Source Dataset Sampling Location
Location Namevillage of Ngallou, Senegal
CoordinatesLat. (o)14.0491Long. (o)-16.7624Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020468Metagenome / Metatranscriptome224Y
F057206Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0189788_11454F020468GGAMPLVKKQITVADGATSDQILAGTTYEYVGPGTRLVVAAAADDAGVSMNFNVNNAEFARDAEVSEKVTGEPFGWKGGYVMNDMVTTAAERNRPIITFTNNSGASRTIDVAVFIGG
Ga0189788_11456F057206GAGGMNYVIYVLCFFTIVNIFMCSIAIARVAEFKKSVAGLDWEAVATLLGDVATVKRSITRLNGRLNGMDNAQPNFDWKDQAAQVLNAPKQPATRGG

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