Scaffold Ga0189785_1622

Overview

Basic Information

• Taxon OID: 3300017826
• Scaffold ID: Ga0189785_1622
• Source Dataset Name: Saline water viral communities from hypersaline Lake Retba, Senegal ? P6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: GATC-Biotech AG, Konstanz, Germany
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 935
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Saline Water → Archevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses

Source Dataset Sampling Location

• Location Name: Lake Retba, Senegal
• Coordinates
  • Lat. (^o): 14.8388
  • Long. (^o): -17.2341

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038111	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0189785_16222	F038111	N/A	MMPNKVPVVNKPEYTIWLENYQNIATFIHADVRKYNKAVKIEFGEDLKKLLALHNFPLYALTHPDNHKLKKFMALYGLVLDHEPICNDNVKRQVYRLDRR