3300017826: Saline water viral communities from hypersaline Lake Retba, Senegal ? P6

Overview

Basic Information

• IMG/M Taxon OID: 3300017826
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129073 | Gp0214342 | Ga0189785
• Sample Name: Saline water viral communities from hypersaline Lake Retba, Senegal ? P6
• Sequencing Status: Permanent Draft
• Sequencing Center: GATC-Biotech AG, Konstanz, Germany
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2151441
• Sequencing Scaffolds: 21
• Novel Protein Genes: 22
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Natronomonas	1
Not Available	17
All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Archevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Saline Water → Archevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hypersaline lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Lake Retba, Senegal
• Coordinates
  • Lat. (^o): 14.8388
  • Long. (^o): -17.2341
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005874	Metagenome	387	Y
F032166	Metagenome	180	Y
F038111	Metagenome	166	N
F042291	Metagenome	158	Y
F049200	Metagenome	147	Y
F050177	Metagenome	145	N
F056354	Metagenome	137	N
F073153	Metagenome	120	N
F074460	Metagenome	119	N
F098766	Metagenome	103	Y
F100427	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0189785_1067	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Natronomonas	6163
Ga0189785_1106	Not Available	4483
Ga0189785_1279	Not Available	2026
Ga0189785_1330	Not Available	1723
Ga0189785_1376	Not Available	1538
Ga0189785_1482	Not Available	1245
Ga0189785_1486	Not Available	1227
Ga0189785_1495	Not Available	1210
Ga0189785_1499	Not Available	1204
Ga0189785_1530	All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus	1115
Ga0189785_1580	All Organisms → Viruses → Predicted Viral	1014
Ga0189785_1622	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	935
Ga0189785_1637	Not Available	886
Ga0189785_1696	Not Available	798
Ga0189785_1717	Not Available	769
Ga0189785_1723	Not Available	765
Ga0189785_1742	Not Available	730
Ga0189785_1747	Not Available	722
Ga0189785_1808	Not Available	620
Ga0189785_1835	Not Available	585
Ga0189785_1857	Not Available	551

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0189785_1067	Ga0189785_10678	F098766	MSHPTCAVCGGEADGAHHVKVEVERIPPEEPPKTYYFHHTCFENSQSWERGL
Ga0189785_1106	Ga0189785_11068	F042291	MPVYQSYNKRINAWVKYEFTDKGVKWKNVKEREPKKPFKGIPKK
Ga0189785_1279	Ga0189785_12794	F074460	MYYHCPHCRTWRPDTYVRIDPRTRIPQCEYCEEFVNGRLGDAAYKELLKKHALEVPPPGKLR
Ga0189785_1330	Ga0189785_13303	F050177	MARIPSDPPDDELTSEQLAERVDDITNLTVEELEAFRASDYNEEYLEGNSDRAQRGNEPLDDVIRLLETPRNQWRDVDDGFNEIEEARELLDFQRRTQAQIKSQGLGSNTLPEYDDMTFREAASIRWGIDPDDDREWL
Ga0189785_1376	Ga0189785_13764	F074460	MYYHCPHCRTWRPDTYVRIDPRTRIPQCKYCEEFVNGRLGDAAYKELLKKHALEVPPPGKLR
Ga0189785_1482	Ga0189785_14821	F032166	EPLEDAIRLLETPADEYRDLDDGFNEVEEAEELLDFQRRTQGQIESQGLGENYLTDARDMTKREAASIRWGIDPDADREWL
Ga0189785_1486	Ga0189785_14866	F073153	MSDQDLPVRDEIARIDGNIEGILTRLGQQGESVARLDLLVEEMKEMNQQLEHIEIRLNTLEGRIE
Ga0189785_1495	Ga0189785_14952	F049200	MPELSLGQRLALPYESDDTSISVPAEITGIGLPAVRVETDSGEVFIRHARNVRKWIRHIRHA
Ga0189785_1499	Ga0189785_14993	F074460	MYYHCPHCRTWRSDTYVRIDPRTRIPQCEYCDEFVNGRLGDAAYKELLKKHALEVPPPGE
Ga0189785_1530	Ga0189785_15301	F098766	MTHPTCAVCGYEADGADHVRVAVARVPPEEPAVTYHFHPRCFDAAQDWQRG
Ga0189785_1580	Ga0189785_15801	F005874	MAKIPSDPPDDALTPEQLYDRVEDTVNLSVDDLFAFKRSEYNEAYNAQKSDAAQPKDEPLDDVIRLLSTPPEAWKDEDDGFNEVEEAEELLDFQRRTQAQIDSQGLGMNFLTDERDMTMREAASIRWGIDPDDDREWL
Ga0189785_1622	Ga0189785_16222	F038111	MMPNKVPVVNKPEYTIWLENYQNIATFIHADVRKYNKAVKIEFGEDLKKLLALHNFPLYALTHPDNHKLKKFMALYGLVLDHEPICNDNVKRQVYRLDRR
Ga0189785_1637	Ga0189785_16373	F074460	MYYHCPHCRTWRSDTYVRIDPRTRIPQCEYCDEFVNGRMGDAAYKQLLKEHALEVPPPGELG
Ga0189785_1696	Ga0189785_16962	F074460	MYFHCPHCRTWRADSYVRIDARTRIPQCIYCDAFVNGRLTDGEYKQLLKQKALEVPPPGELQ
Ga0189785_1717	Ga0189785_17171	F073153	MSDQDLPVRDEIARIDGNIEGILTRLGQQGESVARLDLLVEEMKEMNQQLEHIEIRLNTLEARID
Ga0189785_1723	Ga0189785_17232	F050177	MYVPDNSSIMVTVPSDPPDDQLTPEQLAQRVDDITNLSVDELEAFRASDYNQQYLDGNSAAAQRGNEPLDDVIRLLETPRDQWRDVDDGFNEIEEAEELLDFQRRTQAQIKSQGLGSNTLPEYDDMTFREAASIRWGIDPDDDREWL
Ga0189785_1742	Ga0189785_17422	F056354	MILPVFIALSITAVVITGLAIRGDIPELLGAAVAAIMSIVAGINALDLFLITNSGNVKDIEPQTDIALILLVIFVINLIFIFDRAFSGGN
Ga0189785_1747	Ga0189785_17471	F073153	MSEQDLPVRDEIARIDGNIEGILTRLGQQGESVARLDLLVEEMKEMQQELEHLNIRLNSLEARIDR
Ga0189785_1782	Ga0189785_17822	F100427	MTEVPLLLWIPLWALIATIGHELTHYVFWLPIATDIEWDVWGNELEIEHTAGPWSMRWAIVASMAPLLVGTVALMYWLSTQPSVTAHTGVMAIGLAVYTFAGGKADYSRLTAAVTTRLA
Ga0189785_1808	Ga0189785_18082	F056354	MILSVFIAVSITAVLITGLAIRGDIPELLGAAVAAIMSIVAGINALDLFVITTSGNVKDIDPQTDIALILLLIFIVNIIFIFDRAFSGGN
Ga0189785_1835	Ga0189785_18351	F032166	FKESEYNEAYNAAKSEAAQPGDEPLDDVIRLSETPASMWRDVDDGFNEVEEAKELLDFQRRTQAQIKSQGLGENYLTDARNMQKREAASIRWGIDPDDEREWL
Ga0189785_1857	Ga0189785_18571	F056354	MILSVFIALSIMAVVTTGLAIRGDIPELLGAAVAAIMSIVAGINALDLFVITNSGGVKDIEPQTDIALILLVIFVINLIFIFDRAFSGGN