NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0189786_10455

Scaffold Ga0189786_10455


Overview

Basic Information
Taxon OID3300017825 Open in IMG/M
Scaffold IDGa0189786_10455 Open in IMG/M
Source Dataset NameSaline water viral communities from hypersaline pond near village of Ngallou, Senegal ? P7
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGATC-Biotech AG, Konstanz, Germany
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2077
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Saline Water → Archevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses

Source Dataset Sampling Location
Location Namevillage of Ngallou, Senegal
CoordinatesLat. (o)14.0491Long. (o)-16.7624Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096726Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0189786_104552F096726GGGGGMTRDEWIDPADTEASIREHVERLARGDRLDVDTPTGTERIERRGPEWRLTHLGTGGGWCWSERMDTRQLVDYLTQWRSREGFDPITVRFVKDGGE

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