Scaffold Ga0181552_10037723

Overview

Basic Information

• Taxon OID: 3300017824
• Scaffold ID: Ga0181552_10037723
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2910
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008547	Metagenome / Metatranscriptome	331	Y
F032086	Metagenome	181	Y
F048960	Metagenome	147	Y
F073484	Metagenome	120	Y
F088553	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_1003772310	F048960	N/A	MKPIKIINRIPSPADQIDKELDKLFNTKLSVFLGYAFPLLCGLGWLLILLAIFSS
Ga0181552_100377233	F032086	N/A	MTSNNEPTFLDMNDLCDDSLEALIQHYLSLKHKMPDNECLSPEGSKHDKSGAINLTVRERLLELEREQFNREKEQQEDNQ
Ga0181552_100377234	F008547	AGGA	MSVTIYLTDHNGRKVAFFYRIDSERYNTAPSIIWACRQHPEYQGTAESKEHFIEQAKDVMRELNKISQNNRSTCEKIPTKVCDTCGLTSPKMEAQLTCPDCLINDQ
Ga0181552_100377236	F073484	N/A	MKIQQPTDNSLYITIGNFTYYFDDSIDGEVIVQRWHKDDDDINDPELLQTTEDE
Ga0181552_100377237	F088553	N/A	MNLTLKGTVMKEFEVELSATTYRTFYVTAESAEQAEELAWEVLDDDEEISGAWKDSAKLESVEPTNN