Scaffold Ga0181552_10003990

Overview

Basic Information

• Taxon OID: 3300017824
• Scaffold ID: Ga0181552_10003990
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10406
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F002221	Metagenome	581	Y
F007417	Metagenome	351	Y
F008281	Metagenome	336	Y
F008346	Metagenome	335	Y
F008595	Metagenome / Metatranscriptome	331	Y
F018155	Metagenome / Metatranscriptome	236	Y
F036651	Metagenome / Metatranscriptome	169	N
F058166	Metagenome / Metatranscriptome	135	N
F067646	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_100039901	F008595	AGGAG	MSKEKDMTENQEPVVITINNVEYRASDLNEEQMALAAKLNVAGKKLARLQEHYDDYVITNEYKNLVIESFDRAINAEEEVEVVEEE
Ga0181552_1000399013	F036651	AGGA	MREITLNEVGQTKPLILNIRQIRGYYRDVFTGETKVQTENREYVVRDSLYEIGYLMGVNK
Ga0181552_1000399016	F018155	AGGAG	MGQHKAKVDQRRKELEAEKLDKQIKTYYFQKGAGKHYREVTYMSGKVVRTDYDA
Ga0181552_1000399017	F067646	AGGA	MLEWILYFIAGIFGLVFIGIILSVLAFIYIITELD
Ga0181552_1000399019	F058166	GGAG	MVDILGGMSNPNNESQQVYLAFKTAQQKFFVNGETEIEFKYLQFDPATFKSGWGRYAGEYQYQWDAKFGVAEPKPADDWKRAFSCCVMPHGHDHALIWSRFTFAESSAFNKILTGFWNQMDANSDSLPVVEYKGSKEIQVGMGRSSELSFEFTKFAPRFDNFVIPPFYDNDGGSSADDGFKSPNDGLADLVNKQVNDSNDLLTDEDIPF
Ga0181552_1000399021	F002221	GAG	MTKPVKTYLDETLEQKLKELRTYELDTYVKWGNRKRIFKMVGVNFEIKFCRAEQMLKESLQNDTVQKKLKMVEMMIRAFEQLNIKCEESGYIQIQPNARCFNFDNKTALICDTDADKPVLEKIHKAEKDMVIFSVEELLRCLPKDFMQAKVLLSKLDKSVNFQKVNYV
Ga0181552_1000399024	F008346	N/A	MPIKLKPSAKIRDRATGKTTIEHYYLKCMTLKELNDYIESPNSKKKVIQKCKNEIIRREK
Ga0181552_100039905	F001942	N/A	VPRKTSDQHQANSRLGALGESLVQTFLLEYADFCYPTQEKHPADLMVEFGSAKYTVQVKSRRATKEKKFVFAAENSRSQSETYRQYTCDILAFVFFDDDKKHIMFKANTSSQNYFTFDKKSITDDMELESLKETLDSLSSVPVLNPII
Ga0181552_100039907	F007417	AGGAG	MSATRYTLQVQLPSLGWVVAIKTSDIFYMASKRARLIAQGHKVKLTKEKKNG
Ga0181552_100039909	F008281	AGGAG	MNLMCNTKYGAIEWRWKDSGQPSPEYKSLNHQWWIPKKSEFELVTKVDASIKQEIKDEIWEDMQSDFDYQKGIYKIHKLNKKNLK