NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187802_10003801

Scaffold Ga0187802_10003801


Overview

Basic Information
Taxon OID3300017822 Open in IMG/M
Scaffold IDGa0187802_10003801 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4433
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060373Metagenome / Metatranscriptome133Y
F105801Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0187802_100038015F060373GGAGMTGRRFPPPWSVEELDAMTRPTKSKMEAIKPEQQDFDAVEKEYGPLPPNPGRVALAERYRLAQAAKVIRQLEQVAIGGETKNRKAKRMKAGS
Ga0187802_100038017F105801AGGAGGMKTLALVTAAALTLLTVAGCAQYVGKGKAPPPAAPVVTKG

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