Scaffold Ga0187802_10000225

Overview

Basic Information

• Taxon OID: 3300017822
• Scaffold ID: Ga0187802_10000225
• Source Dataset Name: Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13123
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.9061
  • Long. (^o): -76.1569
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001577	Metagenome / Metatranscriptome	669	Y
F045289	Metagenome / Metatranscriptome	153	Y
F052216	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187802_1000022516	F001577	GGAG	MPRFYFNLSSKDANIPDDSGKELDTLNDAYEHARKLIHKILFHVDHEDAEEWKVVILNNEHDAQMIIPFSVSHAFRAQRRATGRENAKT
Ga0187802_1000022519	F052216	GGAGG	MAADTPQDMSLEQQKLVRALVKALDAVAARLRRVPLDDEKQACRELTDILHAVRAIANAVTP
Ga0187802_1000022520	F045289	AGGAG	MRKISFFAGVAVLFLIGVGTWIGVGTGTSTPALAASTVDPFAMMTIAKDLPTSHYVDYSVVFN