Scaffold Ga0181565_10051136

Overview

Basic Information

• Taxon OID: 3300017818
• Scaffold ID: Ga0181565_10051136
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2988
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028003	Metagenome / Metatranscriptome	193	Y
F077798	Metagenome	117	N
F081356	Metagenome / Metatranscriptome	114	N
F085559	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181565_100511362	F085559	AGGAG	MTINLQQQSDECGYALEAFAKVLKNNNIEAVGKPHIELIMEYQNEYKKIEIRNQRIENEMNFNFVQSEKTEAYKEWESSWIDWAKKKNEH
Ga0181565_100511363	F028003	GGA	LIGQRKKMNINQASGFDKYIIMCDKGQNKLASDYQSYLKFKEVQNALVKISQTPGKTYIFNGVTHEKGMTCAQADRVLDNIFNCKTNMEMISLIVKVARQIGFHEITLPRKIRWGM
Ga0181565_100511364	F081356	GAGG	MGNVKEGKYKVIQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFVPKNYLKKI
Ga0181565_100511367	F077798	N/A	MTDISKKFKMIIENEDLFKSNPEVMLRLKYLVDNKKSFKNITKEEIEALFLYLNRHNIAN