Scaffold Ga0188953_10276

Overview

Basic Information

• Taxon OID: 3300017813
• Scaffold ID: Ga0188953_10276
• Source Dataset Name: Saline water viral communities from Saloum River inverse estuary, Senegal ? P2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: GATC-Biotech AG, Konstanz, Germany
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6592
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (43.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Saline Water → Archevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses

Source Dataset Sampling Location

• Location Name: Saloum River, Senegal
• Coordinates
  • Lat. (^o): 14.0536
  • Long. (^o): -16.2885
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009330	Metagenome / Metatranscriptome	319	N
F015079	Metagenome	257	Y
F042877	Metagenome / Metatranscriptome	157	Y
F063610	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0188953_1027610	F042877	N/A	MSQGLFAAIAVLSFAQIGVEYFQEHQVRLFALVILLLSCLGIVA
Ga0188953_1027612	F009330	GAG	VTLSRYLEKNYADLEQAAYRIAGRDGPDLLHEVILQLYQTKEETIDGLLERGQMKYWVLRVMVNNYNSKTSRYHYKWRKDIERRRKFARHIVDWWDGDGVAAHRDELLTHIEERLAELPWFDAEVFAIYFEEGHTLDSFAEATGISRHTLYTTIRRVRKRIQGAGRQDRQVDQSDGNR
Ga0188953_1027616	F063610	GGA	MKKFRKVHTTVHEIDGKRWEATMWDCTPPGHEDVYELSTTEWKLLGNSQLELF
Ga0188953_102766	F015079	N/A	MQQAQIESIQGKGDWKGKYGTMYKFEIALNDGTVGEANSKSETPPYAVGDEVYYEVLSNNERWGKKLKVSKNPPQQGFAPRASNPNKDKQIIRGMCFKVAGMAWANQYKHKQFDTPHEVMVKDVIELAKKYEQAFNAWMDE