Scaffold Ga0163161_10079521

Overview

Basic Information

• Taxon OID: 3300017792
• Scaffold ID: Ga0163161_10079521
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2411
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032135	Metagenome	180	Y
F046806	Metagenome	150	N
F094834	Metagenome	105	Y
F104372	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163161_100795213	F032135	AGGAG	MTPDPLDPAEQAAYRELDQTRRTGCADNCVCRQEDAYTTKLDLEDLE
Ga0163161_100795214	F094834	GGA	MSHTPSCTTRKELTGNVWVYYSDPDRNCTDQSHVDAYTEETQ
Ga0163161_100795217	F046806	AGGAGG	MNETGGEYVARSIRSCAALTATLGARVNPIFMHEVIRLLEELHTVHAGTHPDIRQNQALTVNNAPDLIDRLQAQISNAVSDLLAHTEPLTRRAEDKVPA
Ga0163161_100795218	F104372	GGAGG	VRDMTITRASRRGAYTLPVEHGRPRTPKPGYEPISTDEWAEIIHLARQQRTEEAITAYGKRRTA