Scaffold Ga0169931_10043674

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10043674
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4977
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016388	Metagenome / Metatranscriptome	247	N
F062727	Metagenome / Metatranscriptome	130	Y
F065780	Metagenome / Metatranscriptome	127	Y
F102851	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1004367411	F016388	N/A	MNAAIAKALDLGQRLISLFIASALPIITGGAILGVDVFKSAGVAGLTALFGVVQKLAAASVDGELTSEEIAAAFGTPKKKAK
Ga0169931_1004367412	F065780	GAG	MKKIIAYIADNTWTWVGTGMVLITLSGPTLRQALLLTGVGIVLHSLISLSQKDTE
Ga0169931_1004367413	F102851	N/A	IVVEELTEEQLEQFTEAIQQAPTKIKKAFEKTIDIFGSQFEDYVPTGSNIPVGERRTLVAAGALMAAIPSTRVRR
Ga0169931_100436749	F062727	N/A	MDGGWALILSAVVTAVGGVIVTVIAQFRKENQEDHAVVANMLQHLFGSVGRVEVKVDKVGADLESHIREHKK