Scaffold Ga0169931_10042757

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10042757
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5051
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078716	Metagenome / Metatranscriptome	116	N
F085211	Metagenome / Metatranscriptome	111	Y
F105019	Metagenome / Metatranscriptome	100	Y
F105175	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1004275710	F085211	GAG	MTVRSFLDDSVVEHKSRPPLRWIANWAGSRASKSLLRLSYLEEDGIESGFRYKLNCEIWDNLWPIYEKYGTFYILNMNMDGKAWDDYDENGIPYWEKTGAVDPDYTPMWDYEDEETGDAFRLVRIKK
Ga0169931_100427573	F105019	N/A	MGKHHDKIAKSLEIRQRNWKNPAGKAPGSMNKKKTGYNRVKANGSK
Ga0169931_100427574	F105175	AGGAG	MTDGKDLNGFTSPKVNDASPWSSNEQYAQDPKAAFPSTDKSSQDGAGLGNGGK
Ga0169931_100427576	F078716	GAG	MSNGTGMDTPPNSQPSGAVTSREATRKHPKQGGFKVDRNRHGIRRETSLVPPTKKTRPKK