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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017788 Open in IMG/M |
| Scaffold ID | Ga0169931_10028580 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6707 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (71.43%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Rwanda: Western Province | |||||||
| Coordinates | Lat. (o) | -1.78 | Long. (o) | 29.2 | Alt. (m) | Depth (m) | 15 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001019 | Metagenome / Metatranscriptome | 804 | Y |
| F001176 | Metagenome / Metatranscriptome | 756 | Y |
| F003603 | Metagenome / Metatranscriptome | 477 | Y |
| F004666 | Metagenome / Metatranscriptome | 428 | Y |
| F091936 | Metagenome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0169931_1002858011 | F091936 | N/A | MMDRSERLKMVIEELLKDIDMSGEEWNDYDKEGIPYWEKWDKND |
| Ga0169931_1002858018 | F003603 | AGGCGG | MKTKEQQVGELLANYVEDHFFNPAALGRYLAEQPIYTIDRVMEVVAWIIEKQAERYRREVANNGTVCEGLIIANTLDKMIDKIKVSNNLKSVELPITPKERGEFIKSLPETKEQNYRYSWLHETDNKTKVTIDHPFI |
| Ga0169931_1002858019 | F004666 | N/A | MKGSITMATKREYLLSKGITVGKRGRFSSAANKALQDAAAQGVTFQAEKPQPKK |
| Ga0169931_1002858021 | F001019 | GGAGG | MIDYAPSLEILEVAYDVSPGGVRTFEVYDREKEGTPIFSSESLTKAVHFCYNLDKDFIVRTYAEWEMRELLGNI |
| Ga0169931_100285805 | F001176 | GAG | MTNGTGMDTPPNNEPSGAVTSQEATRKNPSQGKFRSGFSGPRPATKIDTNKHGIRRETVLGQKKTRPKKV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |