Scaffold Ga0169931

Basic Information
Taxon OID	3300017788 Open in IMG/M
Scaffold ID	Ga0169931_10008422 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15052
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (16.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

15052

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (16.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Rwanda: Western Province
Coordinates	Lat. (^o)	-1.78	Long. (^o)	29.2	Alt. (m)	Depth (m)	15
Location on Map

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Source Dataset Sampling Location

Location Name

Rwanda: Western Province

Coordinates

Lat. (^o)

-1.78

Long. (^o)

29.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F014605	Metagenome / Metatranscriptome	261	N
F039629	Metagenome / Metatranscriptome	163	N
F057211	Metagenome / Metatranscriptome	136	Y
F084121	Metagenome / Metatranscriptome	112	N
F085401	Metagenome / Metatranscriptome	111	Y
F093739	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1000842211	F001775	GAGG	MRRLLDDERIRIAIVSFLLGIILAFFIYPKPEFETVYKTKIERLTDTLYITSSDTVYIPKTKIKKEILRDTILIDFKPKISRFETSFPFEYGSTKVSGEVLGEVLKMTATNDYKLPVVTNTIIETKTETIVVKPKGIYIGAGVNSLLQPSAGVAYLDNKYLFSYQFQPMQKTHQIGVSKKLF
Ga0169931_1000842214	F093739	N/A	MKYSKDQIKRAVRSCVFCERNGIKADMDMEDHPYAGEILYNYFSGVAESRLAELLQNPRYILKLELIQRHLTHNYK
Ga0169931_1000842216	F084121	N/A	MQKKKVLCHSDYTLKRRFINKFNEYTPWQDIGHGEWLSLEDVQEKIKLLVQNYRSKHVEVWFEKDGKLLDYNGNVTNEPIKFIPK
Ga0169931_1000842221	F039629	N/A	MLEALDEITEIPFEVFWDKFMDICPGIYDRFTAEVYWVKMREANRILAFEYLCKFGTDYKEPWKHLHHFDLPF
Ga0169931_100084223	F014605	N/A	MKVNLAVAVTDIEGNEIPNEKGEQMLLSKLVGNALFTAEDKEDPIRVYELAKKIYYSEGEIEITKSDADLIKEKVKAKGFTVLILAPLYEALKD
Ga0169931_1000842232	F085401	AGAAG	MLYEMMSATEYGVLKGYSEKSTRVHQIIRSGKFPSEWVQAPKKIGNQWIVFVDANWIKDVSR
Ga0169931_1000842233	F057211	N/A	MLKDHYYCLEQSGLTLELESFENDGIALELYFGGGKSLTLDIYDDLTERFSDHYRTICSVLDPFIVEQLEEEVKKCFTK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0169931_10008422

Overview

Ecosystem & Geography

Associated Families

Sequences