NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181355_1064046

Scaffold Ga0181355_1064046


Overview

Basic Information
Taxon OID3300017785 Open in IMG/M
Scaffold IDGa0181355_1064046 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1549
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002738Metagenome / Metatranscriptome533Y
F020161Metagenome / Metatranscriptome225Y
F043890Metagenome / Metatranscriptome155Y
F093735Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0181355_10640461F020161N/AMTQLTQAKLKDLNVLKLYEHYDALEKSLPLLTPESQELAKAELEACANLRSEKIDRIYYAIASHEDALERIKKEGDHITQAKRHHESQLRSLKGLLNYLRRVLPVDSNKITGRNYQFTLVKKKELTVEVSSDPEFWHTTERELYCVEETVTTTKRVV
Ga0181355_10640463F002738N/AMLVTAMAIDTYGLPSEQYEEFFEDNVRFAAQLYLKTCNIISAEGAGNVDFKTVLDMYQEAVYATNDDCRKYQKANNPEAIKDTDLFGIYPSREDMMEEIKAVSAQVEALTAYVTELVKVTTKGLEGIAENLVD
Ga0181355_10640464F043890N/AMQKTSSWATCNPNSIDRLQINCIDEEDGSMTIHIEWDENDPDLQWWTNLGPESQKTFMIKALTDACDCYGD
Ga0181355_10640466F093735N/AVFTQHDAWDLFFNMMEAGYVPFPGTSLPQLKSALKKQ
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