NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181432_1000506

Scaffold Ga0181432_1000506


Overview

Basic Information
Taxon OID3300017775 Open in IMG/M
Scaffold IDGa0181432_1000506 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8159
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (47.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000704Metagenome928Y
F000730Metagenome / Metatranscriptome917Y
F003616Metagenome477Y
F004658Metagenome429Y
F089041Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0181432_100050611F089041N/AMPEELASKIRNGNIRINSQEKLHKTFNLNISEFALLEQLKTKWHFSDYSQTVLYCIWCASVSDGIESA
Ga0181432_100050616F004658N/AMLMNGGQIIMPEYLKKVYDFFKTNNTAKDVLIGSISFIAGGYILNKITKRDNEEE
Ga0181432_10005062F003616AGGAMIWSKKLGHEIGTYNSLGGIKINPKPFIHSTLNTIVSCRICKGTGLNAITHDSGLVTLNKCVLCKGAKRRSNRI
Ga0181432_10005066F000730N/AMEYSNTLNRGCLILVNELIPAELVPLVWFSVIAVTVYVFFRVFSSTLKEKFRQTNLSRKKAESSGHTDDQIDDLINNAPRILNEINKTIAEQKAQGVSDEQMKGIYQKKQMLELVSNNAEVINLIGKPIIKKLLGVVKSL
Ga0181432_10005067F000704AGGTGGMPHTNGDIQPSQVKAVATYDIGSYGEDLWLPLTDVGLTETALTFSTATVTRDTSDSNQPVDTYPRVFSDTDSGLLLNEGNDAVFSQTYTLDPDMTAIIYKISLNFCAVLTCSAYTNGGLSIGGLHIKLTERSTNDRLLYENTFQSGAATLGATGTQMHWFTQDIVETIKVNKGNPVDILIELNTVVTGTNTRQEGYAPLAPLLKTAVLKPFFESGISLHLHPDLSHADGVFKYSKQRVSNLGQ
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