Scaffold Ga0181430_1023974

Overview

Basic Information

• Taxon OID: 3300017772
• Scaffold ID: Ga0181430_1023974
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1989
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013818	Metagenome / Metatranscriptome	268	Y
F034895	Metagenome	173	N
F057671	Metagenome / Metatranscriptome	136	Y
F075974	Metagenome	118	Y
F093707	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181430_10239742	F057671	N/A	MSKTKELDRVANEVYNQVLEHLYKTTAMELEYSDLKILKDYNELHEYVMNQVINKFIQK
Ga0181430_10239743	F093707	N/A	MKKTLRFVRIEEIRFPILEYKDNKIDAKELINKLEKLINKYE
Ga0181430_10239746	F075974	AGGA	MVKKLERGLYIIIFSAMSFFLGVFYTFYEIDQRIWNEELLKARDIETRYINYKQKKYYKKSDLDLIIFGEIK
Ga0181430_10239747	F013818	N/A	MSNSVKKYHEMRQDIIDKESLYLCSEVEKALERIISYDDGMLDDKLFTKIKKPAIKLLKEWHL
Ga0181430_10239748	F034895	N/A	MTTLLEQLRPEIVKALEKNRDKYDYPVTELYNSLDNKHLYSELSVGEMRDLTLWADVDERTWDYVDWKYGIKLFVDTIDAKRY