Scaffold Ga0181343_1000673

Overview

Basic Information

• Taxon OID: 3300017766
• Scaffold ID: Ga0181343_1000673
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14459
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (51.28%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004314	Metagenome / Metatranscriptome	444	Y
F029416	Metagenome / Metatranscriptome	188	Y
F029725	Metagenome / Metatranscriptome	187	Y
F071172	Metagenome / Metatranscriptome	122	Y
F080645	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181343_100067310	F004314	AGGA	MYDDYDLDYTYGNDNAYDLDEQDLDEEYARDGQDYESLAYRHYA
Ga0181343_100067315	F080645	N/A	MTKLLTSEQVSNLLQDHCYRVINEMDQDDLFSYAVQMMMQSFDQNPGQGDTDVAMLIEDIWVAEGEDDDSTLEFIAGAVGDELAEEIMKTTQF
Ga0181343_100067317	F029416	GGA	MSDTLSKNIYRQLFTEDQWDMIYNFIGNALDVEEYNPEDVYAIRNKIHLLFENA
Ga0181343_100067319	F029725	GAG	MTNRTELEWFLKEKCREDPDLLDTVISEYVWNMSESKLTELEDFLSNNFGDE
Ga0181343_100067320	F071172	GGAG	MNLTSQQLNQLVENYAERIVDEMDVKCLVQFAYDTIVENMSNMGPEDVLNEIAGVYDEEILQELVESVTP