Scaffold Ga0181408_1006090

Overview

Basic Information

• Taxon OID: 3300017760
• Scaffold ID: Ga0181408_1006090
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3486
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016661	Metagenome	245	Y
F065668	Metagenome	127	N
F079927	Metagenome	115	N
F097118	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181408_10060904	F097118	GAGG	MIKFPSGLKFGNGEDSLVNSLFTSDTTNDGWYTVTGRKNKTMRFFAGNGKPLFYIVSNKHGITSGNLTNSGEKFYYMAGTSSLTSKKLGLDKLDYTTEKTLITNIIEAA
Ga0181408_10060905	F016661	GAGG	MNYTAERYLALKQFEREQKRDKWRTILWNVSVTGIFAMVLIQIAGVL
Ga0181408_10060906	F065668	GGGGG	MLYTIWVGGVEVTPFLTNREEAYRIASNWRNDGYNDVIVERFKPYEYHS
Ga0181408_10060908	F079927	GAGG	MSKDYREQAQLEDEADEKYLTMYQYYKELTDYERGEYDALHSYPFDESEEANKEYTEGYRTGYEYAQRMGAKDNE