Scaffold Ga0181409_1019910

Overview

Basic Information

• Taxon OID: 3300017758
• Scaffold ID: Ga0181409_1019910
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2173
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005105	Metagenome / Metatranscriptome	412	Y
F012166	Metagenome	283	Y
F057760	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181409_101991010	F012166	GAG	MADLANSGVFLGRKLTPEEKLWKAVLSQGVYEACSKKYNALPLTYGEMRSALEWIDMYNKDFRDVCYFAGYDPAYIYRKAKNKVNKWLPNGA
Ga0181409_101991011	F057760	N/A	STITKLQTKIAPDVKLSRSQVVKTLVNEKARKLNGRLSK
Ga0181409_10199109	F005105	N/A	MVRRICEECMGNGYRRIWKDQTESKKITIQCTKCESAGEIDEEPNYDNNGSGTNKLQ