Scaffold Ga0181344_1219937

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1219937
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 530
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007518	Metagenome	349	Y
F026442	Metagenome / Metatranscriptome	198	Y
F079997	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_12199371	F026442	AGGA	MTYANIEMKIIQWAEARKIIPHSTPETQLLKAVSEMGELAD
Ga0181344_12199372	F007518	GGAGG	MTDWTKEEDEAFNEVEKQSNLGKQILRDLGQPYHFDVYVSPSQRNHVLEEVALEFDKMKQFGDTAESFAIFVRNLKGKL
Ga0181344_12199373	F079997	N/A	GAVHASNKFKFCNMCDTSKPPEGGIEIGVKWSCQACWLKRITGVHLKQNRINGGAK