NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1024970

Scaffold Ga0181344_1024970


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1024970 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1840
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003579Metagenome / Metatranscriptome478Y
F005113Metagenome / Metatranscriptome411Y
F009125Metagenome322Y
F013396Metagenome271N
F041167Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0181344_10249701F041167N/AMEPVITFAASAGVIDAQTGIIRGVSLNTKGPALGHGVMIDDKTLEQVKAAAEQYAGGLKVKLDH
Ga0181344_10249702F009125N/AMNSDNIKDALTAATPAAAMISLSQVNEFAALVGTLLGIAFLLWRWRREAKKED
Ga0181344_10249705F013396N/AVNLKRSLLLAVLALGLVVVLGLALRSERVLTAGLPLRIVAKTQDEARTLAGLGAVAVLGTGSMAPYIAAAPAGTDPLATVMAYVVTVQGATIADVKAGSLCIYIPEWAGRHVMHQAASFSEGGWIMTGLGTKTYENAERMTGRNFVGIVSRTYIWP
Ga0181344_10249706F005113GGAGGMTKDEHKSAIVQQLQQQSLNLLVDSLAAALAEIEQLKAAANADKPTP
Ga0181344_10249707F003579N/AFSQAIFNLTTPMTIIPISPYTMGSPAQPKVGTQFECRYIQYTGVTAVADCHLLDAEGVEIMPVGLVPATAEQCAAWTDDAAFAAVLAVNAGFELVSEE
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