Scaffold Ga0181344_1003002

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1003002
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5906
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (95.83%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019438	Metagenome	229	Y
F021243	Metagenome	219	Y
F042869	Metagenome	157	Y
F059768	Metagenome / Metatranscriptome	133	Y
F068756	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100300211	F021243	GGAGG	MKDPEDEAFEQLSLKQGSWEHTSGWRKKQIAHMDMHSHPAEFVHLHRNDTLEEVAVELETKFTGPFGRDTVQSFVAYIRGMKRAREA
Ga0181344_100300217	F059768	AGGAG	MTFQEQIKALPEAERLKFFRQIMEVVDAGRKAGVPPEQWAKECADIYKNIEVKA
Ga0181344_100300218	F042869	GGAGG	MNKLIRKEDTSKNWVPIGSLELKLVVAKAEGYAIRVDETRYHHVVDGTTVTSVDESKPKYYYYGPQELLLPMLDPYRIAMEFYLKEKT
Ga0181344_100300219	F019438	GGAG	METIATTIILGFIGVVVAGLVLIALMRLWFWMDEDERRDR
Ga0181344_10030029	F068756	GGAG	MSDFKSGFGLAPIKKEGSIADPDAFTWECACEACALKYQKWKELFDIQQKELRGEK