Scaffold Ga0181344_1001264

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1001264
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9383
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028146	Metagenome	192	N
F051072	Metagenome	144	Y
F081254	Metagenome	114	N
F104765	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100126412	F104765	AGGAGG	MKAAEIIAICSIMLSAGIGAGFFWGLRQGERLGRDREWMDSFFRSIKRDRDRRDKQGRFK
Ga0181344_10012646	F051072	GGAGG	MQNNFNRHEPIKNLTGGGHSAARYTGTHGHVERSAHYCFIPGEGWVSWREIYDQFDEAFRDWQMRQALGIRGKRKPSGERT
Ga0181344_10012647	F081254	N/A	MQNEELLTAILNELRAIRSALSNRSAPAAAPAAQLAAQAGKDIPQPSEIVADPGSVEVHFGKNKGTALRSLGAKSVEWYAQEPEPRIGNNGKPFPPRAEDVRLRNAARQLVHGQRGTLAAGTKVTLVSETLTEEVPF
Ga0181344_10012649	F028146	N/A	METTNEIKKAAVIAAASEQVRALLETHYDAMRKAAEESFVDDETQAEPKAKASFTIEWDALAMAPTVTVKVGWSVRFKDESESVVDPLQAKLEIGGVE