NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181392_1044089

Scaffold Ga0181392_1044089


Overview

Basic Information
Taxon OID3300017749 Open in IMG/M
Scaffold IDGa0181392_1044089 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1379
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089523Metagenome109N
F090886Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0181392_10440891F090886N/AMILKTKLIDPLQELQLDGFQKLNELLNINHHSPTSS
Ga0181392_10440892F089523GAGMRVMPKKTKTKSAKIVKFQKPKTSKNITLDKLPNGDLITSIEHYKSKDYERMFTIDDVLLLIPKDLKKRTWANWRELNNAPGVLREDKLGPEYVIRGKKIYRIKLIWILRYIKGLNWEPSTQVQVSATQSDEIQLRSSSSI

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